Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242446g00004 ATGCCGCCTAAGCAGCCATCTAAATCTGATTTAGCGAAGAAGCAGAAGATCGTAGAGGACAAAACCTTCGGTCTCAAGAACAAGAACAAGAGCAAAAATGTCCAGAAATATGTTCAGAACCTCAAGCAATCCGTACAACCCAAGCCCGATCCTTCCAAAACCGCCGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAGCTGAATGAATTGTTCAAGATAGCTGTTACACAACCCAAAGTCCCTGTTGGTGTTGATCCTAAGTCCATATTGTGTGAGTTTTTCAAGGTTGGACAATGTGCTAAGGGATTCAAGTGCAAGTTTTCGCATGACTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATCTATAGTGATAAGCGCGACCAGGAAGAAACGATGGAGGATTGGGATCAAGAGACTTTGGAGAAGGTAGTAGAGTCGAAGAAAACTGAATACAATCAGAACAAACCAACTGATATTGTAAGTTTCAATGCATTCGTTGGAGACTTTGAATTATCAGTTGATTTGTACCGGTCATTGGATCATGAAGGTCAATGGGCCATTAATGTTGTTTGTGTTCTCTGTTCAGGTATGTAA 606 0.4191 MPPKQPSKSDLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPKPDPSKTAAKKKKEEEKAKDKELNELFKIAVTQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQEETMEDWDQETLEKVVESKKTEYNQNKPTDIVSFNAFVGDFELSVDLYRSLDHEGQWAINVVCVLCSGM 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242446g00004 201 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Stsc242446g00004 201 Gene3D - 86 159 - -
Stsc242446g00004 201 MobiDBLite consensus disorder prediction 40 64 - -
Stsc242446g00004 201 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Stsc242446g00004 201 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Stsc242446g00004 201 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242446g00004 Stsc-Chr242446 11412 12357 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc242446g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242446g00004 - - gmx:100806617 286.189