Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242441g00001 ATGTCTCTAGAATTATCTTTGATTTCTTCTACTACTAGTAGCTTACAACAAGGCAAAACTAGCAATCATGGTGGATCATCAAGAAATTTGAAGGCAAGGAAGAAACCGAGCCCAAGAGATCCCAAGAAAAGGGGCTGCACCGGGTGGGAGTGTTCAACATCACTGGAGCTTTACGACAATCCATGGAAGATCAAGAAAAAGCTGACAAAGAGCGATACCGGGAAGCTGAACCGGATCCTTTTCGGGTCGGATTTGCTGGAGAACTTGATGGTTCCGATGCTGAGCGTGGAAGCGCAAAGGGAAGCGGAGTGCGGCATGGGAACCCCAATTAGGGTTTGGGATGTTGATACCATGTCCATGCACCATCTTATTCTCAAGCGTTGGGCTTCTTTCAAGAGCTATGTGTTGATTGGGAACTGGAACAAAGAATTTGTGAGAAGAAGGGAGTTGAAGGAAGGTGATGTTGTTGGCCTTCACTGGGATTCATATCGACGATGCTTCAACTTCTCTGTGCTTAAGCGCAGTGATCATCACTACTCTTAA 543 0.4604 MSLELSLISSTTSSLQQGKTSNHGGSSRNLKARKKPSPRDPKKRGCTGWECSTSLELYDNPWKIKKKLTKSDTGKLNRILFGSDLLENLMVPMLSVEAQREAECGMGTPIRVWDVDTMSMHHLILKRWASFKSYVLIGNWNKEFVRRRELKEGDVVGLHWDSYRRCFNFSVLKRSDHHYS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242441g00001 180 SUPERFAMILY DNA-binding pseudobarrel domain 60 171 IPR015300 -
Stsc242441g00001 180 Gene3D - 59 179 IPR015300 -
Stsc242441g00001 180 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 27 175 - -
Stsc242441g00001 180 MobiDBLite consensus disorder prediction 1 46 - -
Stsc242441g00001 180 CDD B3_DNA 62 173 IPR003340 GO:0003677
Stsc242441g00001 180 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242441g00001 Stsc-Chr242441 9640 10182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242441g00001 64 159 RAV Transcription Factor Family AT1G50680 32.692 9.06e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242441g00001 - - lja:Lj6g3v1382150.1 211.075