Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242434g00002 ATGGAACAAAACACAGACATGTTCAGGGTACCTTCTTCAGGGGGAGGAGTAGGAGGAGGAACGGGACCATCGCCTTCGTCTTCGTCTTCCTCTTTGGTTTCTTCGTCATCTTCGTCATTGTCGTCTTCGAATTCTAGAAGGTTCGGAACCATTTCTCCCTCTAACATCATCAACGCGCCATTGTCGCTATTATTAGAATATTCAGGGATTCTTCGCAACAACAACAGCACTACCAGGTCGAATTTCAATCCCCACGAACCTAACCCTAACCCTAATTCGGAGCCTTCCGTAAATGACGGCGAGGTATCGATCAGGATCATTAGTCCCTCCGAACACGATAATCACCGTCACAGGGAGGAGCAACCTTCGTCTTCTGGTGGGGGTGGTTTGGTGGTGGGGCTTTCTCACGATGATGGTGTGTCCGTTATGCCCAATTCGAGTACCGGAGATGGCGGCGGGATTGGGAATGAGAATGGAAACGGCGATGCGGGGACCGGCGGTGGTGAGGGTGGCGGCAATGGGAGGGATTCTTCTTACCAAAGGTATGATATTCAGCATGCTGCAAGGTGGGTGGAGCAGGTTCTTCCGTTCTCCTTGCTCCTGTTGGTTGTCTTCATCCGCCAGCATTTGCAAGGCTTTTTCGTTACAATTTGGATTGCTGCTGTCCTTTTCAAGTCGAATGACATTCTAAGGAAGCAAACAGCTTTGAAGGGAGAGAGGAAAGTACCTGTTCTCATTGGGATTTCTGTTGCATTTTCACTTCATGTGATTAGCATCTATTGGTGGTATCAGAATGATGATCTGATGTATCCATTGGTCATGCTTCCTCCGAGAGAGATACCGCCTTTCTGGCATGCGATTTTCATCATCATGGTTAATGACACCTTGGTCCGCCAGGCTGCAATGGTATTCAAGTGTGTATTGTTGATCTATTATAAGAATAGCAGAGGCCGAAATTATCGTCGGCAGGGGCAAATGCTGACTCTAATTGAGTACCTTCTTTTGCTATACCGTGCCTTGTTGCCGACACCAGTCTGGTATCGTTTCTTTCTGAACAAAGAGTATGGAAGCCTCTTTTCATCACTGATGACAGGGCTGTATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAGTAAAGGCATTGTCACGGAAAGAAGTGCATTATGGTGCTTATGCAACATCAGAGCAGGTGATTGCAGCTGGCGATCTTTGTGCTATTTGTCAAGAGAAGATGCATGCTCCAATATTACTTCGGTGTAAACACATCTTCTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCAGCAGACCTAAGGTCATTTGGTGATGGTTCTACTAGTTTATTTTTCCAGTTATTCTGA 1422 0.4648 MEQNTDMFRVPSSGGGVGGGTGPSPSSSSSSLVSSSSSSLSSSNSRRFGTISPSNIINAPLSLLLEYSGILRNNNSTTRSNFNPHEPNPNPNSEPSVNDGEVSIRIISPSEHDNHRHREEQPSSSGGGGLVVGLSHDDGVSVMPNSSTGDGGGIGNENGNGDAGTGGGEGGGNGRDSSYQRYDIQHAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKVPVLIGISVAFSLHVISIYWWYQNDDLMYPLVMLPPREIPPFWHAIFIIMVNDTLVRQAAMVFKCVLLIYYKNSRGRNYRRQGQMLTLIEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242434g00002 473 MobiDBLite consensus disorder prediction 76 99 - -
Stsc242434g00002 473 ProSitePatterns Zinc finger RING-type signature. 427 436 IPR017907 -
Stsc242434g00002 473 MobiDBLite consensus disorder prediction 106 122 - -
Stsc242434g00002 473 MobiDBLite consensus disorder prediction 76 177 - -
Stsc242434g00002 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 460 IPR013083 -
Stsc242434g00002 473 SMART ring_2 412 449 IPR001841 -
Stsc242434g00002 473 SUPERFAMILY RING/U-box 403 455 - -
Stsc242434g00002 473 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 35 473 IPR044235 GO:0061630|GO:1904294
Stsc242434g00002 473 MobiDBLite consensus disorder prediction 19 53 - -
Stsc242434g00002 473 MobiDBLite consensus disorder prediction 1 53 - -
Stsc242434g00002 473 MobiDBLite consensus disorder prediction 140 154 - -
Stsc242434g00002 473 ProSiteProfiles Zinc finger RING-type profile. 412 450 IPR001841 -
Stsc242434g00002 473 Pfam Zinc finger, C3HC4 type (RING finger) 410 453 - -
Stsc242434g00002 473 CDD RING-HC_RNFT1-like 410 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242434g00002 Stsc-Chr242434 19098 22807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242434g00002 46 473 C3H Transcription Factor Family AT5G01960 68.046 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242434g00002 - K22379 aip:107639742 738.028