Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242432g00004 ATGATGGCTTCGGCCTTCGTCAAGCTCGACGATTCTCCAATGTTCCAGAAGCAGTTATCATCCCTTGAAGCAAATGCTGATGAGTTAAAGGATCGGTGCCAGAAACTGTTCAAAGGATGTAGGAAGTTTATGAATGCTTTGGGGGAAGCATATAATGGAGAAATTGCGTTTGCTGATTCATTGGAAATATTTGGTGGTGGCCTGGATGACCCTGTTAGTGTGTCAATTGGAGGACCGGTCATATCTAGATTTGTTACTACATTACGTGAGCTATCTACTTTTAAAGAGCTTCTTCGTTCGCAGGTTGAACATGTGATGATTGACCGGCTTACAGAGTTTATAAATGTTGATTTACAAGAGGCAAAGGATTCTCGCAAACGTTTTGACAAAGCTGTGCATACTTATGATCAGTCACGAGAAAAATTTGTATCGTTGAAGAAAAATACGCCAGAAGACATTGTTGCTGAATTAGAAGAGGATCTACAAAATTCGAAGTCAGCATTTGAAAAAAGTCGCTTCAATCTAGTACACACTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCGATAATGGATGCTCATCTAAGATACTTTAAGCTGGGCTATGAGTTACTGAGCCAAATGGAACCGTATATTCACCAGGTGTTAACATGTGCACAACAATCTAAAGAACTGGCTAATATTGAACAAGATAAGCTTGCAAAACGAATCCAAGAATACAGAACACAGGCTGAGTTGGAAAGCATACGGGCTTCCAACAATACAGAACACTTGCCAGGTGCTGATGGCACACATGTTGTAGGTTTGAACACTTACAAAGGCTTTGAAGGAGGGATACAGCCTGCAGCCAAAGGGGAGGTTCAAACAGTTAAACAGGGCTATCTATTAAAACGCTCTTCAAGCTCTCGAGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAGTTTATTTTATTACAGCATGAAGGGACCCAAACCCAAGGGCGCTCAGTCATATAATTATAATCGTCCTCCTGAACATAGTGGCATGTTTGGTAGATTTCGATCAAGGCACAACAGGTCATCATCGCAAAATGATGATGCTTTGGGTTGTTGTTCAATTGATCTGTGCACATCCTCTATAAAGATGGACGCGGAGGATACAGATCTACGTCTTTGCTTCCGTATAATTTCTCCCTCAAAAACCTATACACTGCAGGCAGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGGGCTGTTACATCGCTCTTTAATTCTCACTTTCTTCAACAGCCTCATTATGATAGAGAAAATAGAAACTCAGCAACTGGTGCTTCATCAACTAGTCAATCAGAGGATGGTGACAAATATTCGATGGATGACATATATCCAAAGGAAGTCCATAGTGTCTCTAAGATTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAGTGCAGTGCTGCTGATCCGGACTGGGCATCTTTAAACCTTGGCATATTGCTCTGTATAGAATGCTCTGGAGTGCATAGAAATCTTGGAGTTCATATCTCGAAGGTGAGATCTATAACATTAGATGTTAAGGTATGGGAACCTACTATTTTGGAGTTATTTGATAAGTTGGGTAATGCTTATTGTAATTCTATATGGGAAGGCATGCTTCTACTTGGTATTGAAAGAGTAGGTGAATCAAATGGGCCAACAAAACCATGCTTCATGGATGCCTTCCAAGATAAGGAAAAGTTCATACAGGCAAAGTATGTACAGAAATCACTAATCATCAGAGAAGAGGATGTCCCCGGGAATCCTTCAGTTTCTATGAGAATCTGGCTAGCAGTTCAAGCTATGGATGTACGAGAAGTATATCGCCTTATTGTCACCTCAAACTCAAATGTGGTAAATACAAAATATGATGATGTGGTTTCCCATGCTGATGCTAAAGCCTTGGACTTAGAATGTATTACACTGGAAGGCCATGAGCAGGATTCTGAATCTTGCCTCAGCATTAAACAGACTAATGAGACAGAGAAGTGCTTCCATGGATGGTCATTATTACATCTGGCATGTAATTCTGAATCTGCACTAATGGTTGAGTTGTTACTTCAATTTGGTGCTGATGTAAACATGCATGACTATCATGGTAGAACTCCCTTGCACCATTGCATTGCGGGTGGAAAAAATTCACTGGCGAAGTTTCTGTTGAGAAGGGGTGCTAGACCGTCGGCTAAAGATGCCGGTGGACTCACTGTACTTGAAAGAGCAATGGAAATGGGGGCAATAACCGACGAAGAGCTATTCATTATGCTTGCCGAATACCAGTAA 2343 0.4097 MMASAFVKLDDSPMFQKQLSSLEANADELKDRCQKLFKGCRKFMNALGEAYNGEIAFADSLEIFGGGLDDPVSVSIGGPVISRFVTTLRELSTFKELLRSQVEHVMIDRLTEFINVDLQEAKDSRKRFDKAVHTYDQSREKFVSLKKNTPEDIVAELEEDLQNSKSAFEKSRFNLVHTLMNIEVKKKYEFLESISAIMDAHLRYFKLGYELLSQMEPYIHQVLTCAQQSKELANIEQDKLAKRIQEYRTQAELESIRASNNTEHLPGADGTHVVGLNTYKGFEGGIQPAAKGEVQTVKQGYLLKRSSSSRGDWKRRFFVLDNQGSLFYYSMKGPKPKGAQSYNYNRPPEHSGMFGRFRSRHNRSSSQNDDALGCCSIDLCTSSIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAVTSLFNSHFLQQPHYDRENRNSATGASSTSQSEDGDKYSMDDIYPKEVHSVSKILRGIPGNDKCAECSAADPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFDKLGNAYCNSIWEGMLLLGIERVGESNGPTKPCFMDAFQDKEKFIQAKYVQKSLIIREEDVPGNPSVSMRIWLAVQAMDVREVYRLIVTSNSNVVNTKYDDVVSHADAKALDLECITLEGHEQDSESCLSIKQTNETEKCFHGWSLLHLACNSESALMVELLLQFGADVNMHDYHGRTPLHHCIAGGKNSLAKFLLRRGARPSAKDAGGLTVLERAMEMGAITDEELFIMLAEYQ 780
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc242432g00004 780 Gene3D Arf GTPase activating protein 458 607 IPR038508 -
Stsc242432g00004 780 CDD BAR_SFC_plant 17 218 IPR035670 -
Stsc242432g00004 780 ProSiteProfiles Ankyrin repeat region circular profile. 687 718 - -
Stsc242432g00004 780 Pfam Ankyrin repeats (3 copies) 687 751 IPR002110 GO:0005515
Stsc242432g00004 780 ProSiteProfiles Ankyrin repeat profile. 720 752 IPR002110 GO:0005515
Stsc242432g00004 780 ProSiteProfiles Ankyrin repeat profile. 687 719 IPR002110 GO:0005515
Stsc242432g00004 780 SUPERFAMILY ArfGap/RecO-like zinc finger 477 600 IPR037278 -
Stsc242432g00004 780 SMART ANK_2a 687 716 IPR002110 GO:0005515
Stsc242432g00004 780 SMART ANK_2a 720 749 IPR002110 GO:0005515
Stsc242432g00004 780 SUPERFAMILY PH domain-like 296 427 - -
Stsc242432g00004 780 Pfam BAR domain of APPL family 9 231 IPR004148 GO:0005515|GO:0005737
Stsc242432g00004 780 SMART PH_update 296 430 IPR001849 -
Stsc242432g00004 780 MobiDBLite consensus disorder prediction 442 464 - -
Stsc242432g00004 780 SMART 5bar 1 221 IPR004148 GO:0005515|GO:0005737
Stsc242432g00004 780 Pfam Putative GTPase activating protein for Arf 478 599 IPR001164 GO:0005096
Stsc242432g00004 780 PANTHER CENTAURIN/ARF 4 777 IPR045258 GO:0005096
Stsc242432g00004 780 PRINTS HIV Rev interacting protein signature 506 523 IPR001164 GO:0005096
Stsc242432g00004 780 PRINTS HIV Rev interacting protein signature 487 506 IPR001164 GO:0005096
Stsc242432g00004 780 PRINTS HIV Rev interacting protein signature 529 550 IPR001164 GO:0005096
Stsc242432g00004 780 MobiDBLite consensus disorder prediction 442 460 - -
Stsc242432g00004 780 Pfam PH domain 297 426 IPR001849 -
Stsc242432g00004 780 Coils Coil 230 250 - -
Stsc242432g00004 780 ProSiteProfiles PH domain profile. 295 428 IPR001849 -
Stsc242432g00004 780 CDD PH_ACAP 298 432 - -
Stsc242432g00004 780 SUPERFAMILY BAR/IMD domain-like 9 318 IPR027267 -
Stsc242432g00004 780 SUPERFAMILY Ankyrin repeat 626 773 IPR036770 -
Stsc242432g00004 780 SMART arf_gap_3 475 607 IPR001164 GO:0005096
Stsc242432g00004 780 CDD ArfGap 479 594 - -
Stsc242432g00004 780 Gene3D - 614 772 IPR036770 -
Stsc242432g00004 780 ProSiteProfiles Ankyrin repeat region circular profile. 720 751 - -
Stsc242432g00004 780 Gene3D - 289 440 IPR011993 -
Stsc242432g00004 780 Coils Coil 19 39 - -
Stsc242432g00004 780 ProSiteProfiles BAR domain profile. 4 228 IPR004148 GO:0005515|GO:0005737
Stsc242432g00004 780 Gene3D Arfaptin homology (AH) domain/BAR domain 8 254 IPR027267 -
Stsc242432g00004 780 ProSiteProfiles ARF GTPase-activating proteins domain profile. 475 607 IPR001164 GO:0005096
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc242432g00004 Stsc-Chr242432 11893 21240 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242432g00004 485 594 C2H2 Transcription Factor Family AT4G05330 41.441 2.07e-18 85.5