Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc242432g00004 | ATGATGGCTTCGGCCTTCGTCAAGCTCGACGATTCTCCAATGTTCCAGAAGCAGTTATCATCCCTTGAAGCAAATGCTGATGAGTTAAAGGATCGGTGCCAGAAACTGTTCAAAGGATGTAGGAAGTTTATGAATGCTTTGGGGGAAGCATATAATGGAGAAATTGCGTTTGCTGATTCATTGGAAATATTTGGTGGTGGCCTGGATGACCCTGTTAGTGTGTCAATTGGAGGACCGGTCATATCTAGATTTGTTACTACATTACGTGAGCTATCTACTTTTAAAGAGCTTCTTCGTTCGCAGGTTGAACATGTGATGATTGACCGGCTTACAGAGTTTATAAATGTTGATTTACAAGAGGCAAAGGATTCTCGCAAACGTTTTGACAAAGCTGTGCATACTTATGATCAGTCACGAGAAAAATTTGTATCGTTGAAGAAAAATACGCCAGAAGACATTGTTGCTGAATTAGAAGAGGATCTACAAAATTCGAAGTCAGCATTTGAAAAAAGTCGCTTCAATCTAGTACACACTCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCGATAATGGATGCTCATCTAAGATACTTTAAGCTGGGCTATGAGTTACTGAGCCAAATGGAACCGTATATTCACCAGGTGTTAACATGTGCACAACAATCTAAAGAACTGGCTAATATTGAACAAGATAAGCTTGCAAAACGAATCCAAGAATACAGAACACAGGCTGAGTTGGAAAGCATACGGGCTTCCAACAATACAGAACACTTGCCAGGTGCTGATGGCACACATGTTGTAGGTTTGAACACTTACAAAGGCTTTGAAGGAGGGATACAGCCTGCAGCCAAAGGGGAGGTTCAAACAGTTAAACAGGGCTATCTATTAAAACGCTCTTCAAGCTCTCGAGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAGTTTATTTTATTACAGCATGAAGGGACCCAAACCCAAGGGCGCTCAGTCATATAATTATAATCGTCCTCCTGAACATAGTGGCATGTTTGGTAGATTTCGATCAAGGCACAACAGGTCATCATCGCAAAATGATGATGCTTTGGGTTGTTGTTCAATTGATCTGTGCACATCCTCTATAAAGATGGACGCGGAGGATACAGATCTACGTCTTTGCTTCCGTATAATTTCTCCCTCAAAAACCTATACACTGCAGGCAGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGGGCTGTTACATCGCTCTTTAATTCTCACTTTCTTCAACAGCCTCATTATGATAGAGAAAATAGAAACTCAGCAACTGGTGCTTCATCAACTAGTCAATCAGAGGATGGTGACAAATATTCGATGGATGACATATATCCAAAGGAAGTCCATAGTGTCTCTAAGATTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAGTGCAGTGCTGCTGATCCGGACTGGGCATCTTTAAACCTTGGCATATTGCTCTGTATAGAATGCTCTGGAGTGCATAGAAATCTTGGAGTTCATATCTCGAAGGTGAGATCTATAACATTAGATGTTAAGGTATGGGAACCTACTATTTTGGAGTTATTTGATAAGTTGGGTAATGCTTATTGTAATTCTATATGGGAAGGCATGCTTCTACTTGGTATTGAAAGAGTAGGTGAATCAAATGGGCCAACAAAACCATGCTTCATGGATGCCTTCCAAGATAAGGAAAAGTTCATACAGGCAAAGTATGTACAGAAATCACTAATCATCAGAGAAGAGGATGTCCCCGGGAATCCTTCAGTTTCTATGAGAATCTGGCTAGCAGTTCAAGCTATGGATGTACGAGAAGTATATCGCCTTATTGTCACCTCAAACTCAAATGTGGTAAATACAAAATATGATGATGTGGTTTCCCATGCTGATGCTAAAGCCTTGGACTTAGAATGTATTACACTGGAAGGCCATGAGCAGGATTCTGAATCTTGCCTCAGCATTAAACAGACTAATGAGACAGAGAAGTGCTTCCATGGATGGTCATTATTACATCTGGCATGTAATTCTGAATCTGCACTAATGGTTGAGTTGTTACTTCAATTTGGTGCTGATGTAAACATGCATGACTATCATGGTAGAACTCCCTTGCACCATTGCATTGCGGGTGGAAAAAATTCACTGGCGAAGTTTCTGTTGAGAAGGGGTGCTAGACCGTCGGCTAAAGATGCCGGTGGACTCACTGTACTTGAAAGAGCAATGGAAATGGGGGCAATAACCGACGAAGAGCTATTCATTATGCTTGCCGAATACCAGTAA | 2343 | 0.4097 | MMASAFVKLDDSPMFQKQLSSLEANADELKDRCQKLFKGCRKFMNALGEAYNGEIAFADSLEIFGGGLDDPVSVSIGGPVISRFVTTLRELSTFKELLRSQVEHVMIDRLTEFINVDLQEAKDSRKRFDKAVHTYDQSREKFVSLKKNTPEDIVAELEEDLQNSKSAFEKSRFNLVHTLMNIEVKKKYEFLESISAIMDAHLRYFKLGYELLSQMEPYIHQVLTCAQQSKELANIEQDKLAKRIQEYRTQAELESIRASNNTEHLPGADGTHVVGLNTYKGFEGGIQPAAKGEVQTVKQGYLLKRSSSSRGDWKRRFFVLDNQGSLFYYSMKGPKPKGAQSYNYNRPPEHSGMFGRFRSRHNRSSSQNDDALGCCSIDLCTSSIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAVTSLFNSHFLQQPHYDRENRNSATGASSTSQSEDGDKYSMDDIYPKEVHSVSKILRGIPGNDKCAECSAADPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFDKLGNAYCNSIWEGMLLLGIERVGESNGPTKPCFMDAFQDKEKFIQAKYVQKSLIIREEDVPGNPSVSMRIWLAVQAMDVREVYRLIVTSNSNVVNTKYDDVVSHADAKALDLECITLEGHEQDSESCLSIKQTNETEKCFHGWSLLHLACNSESALMVELLLQFGADVNMHDYHGRTPLHHCIAGGKNSLAKFLLRRGARPSAKDAGGLTVLERAMEMGAITDEELFIMLAEYQ | 780 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc242432g00004 | 780 | Gene3D | Arf GTPase activating protein | 458 | 607 | IPR038508 | - | |
Stsc242432g00004 | 780 | CDD | BAR_SFC_plant | 17 | 218 | IPR035670 | - | |
Stsc242432g00004 | 780 | ProSiteProfiles | Ankyrin repeat region circular profile. | 687 | 718 | - | - | |
Stsc242432g00004 | 780 | Pfam | Ankyrin repeats (3 copies) | 687 | 751 | IPR002110 | GO:0005515 | |
Stsc242432g00004 | 780 | ProSiteProfiles | Ankyrin repeat profile. | 720 | 752 | IPR002110 | GO:0005515 | |
Stsc242432g00004 | 780 | ProSiteProfiles | Ankyrin repeat profile. | 687 | 719 | IPR002110 | GO:0005515 | |
Stsc242432g00004 | 780 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 477 | 600 | IPR037278 | - | |
Stsc242432g00004 | 780 | SMART | ANK_2a | 687 | 716 | IPR002110 | GO:0005515 | |
Stsc242432g00004 | 780 | SMART | ANK_2a | 720 | 749 | IPR002110 | GO:0005515 | |
Stsc242432g00004 | 780 | SUPERFAMILY | PH domain-like | 296 | 427 | - | - | |
Stsc242432g00004 | 780 | Pfam | BAR domain of APPL family | 9 | 231 | IPR004148 | GO:0005515|GO:0005737 | |
Stsc242432g00004 | 780 | SMART | PH_update | 296 | 430 | IPR001849 | - | |
Stsc242432g00004 | 780 | MobiDBLite | consensus disorder prediction | 442 | 464 | - | - | |
Stsc242432g00004 | 780 | SMART | 5bar | 1 | 221 | IPR004148 | GO:0005515|GO:0005737 | |
Stsc242432g00004 | 780 | Pfam | Putative GTPase activating protein for Arf | 478 | 599 | IPR001164 | GO:0005096 | |
Stsc242432g00004 | 780 | PANTHER | CENTAURIN/ARF | 4 | 777 | IPR045258 | GO:0005096 | |
Stsc242432g00004 | 780 | PRINTS | HIV Rev interacting protein signature | 506 | 523 | IPR001164 | GO:0005096 | |
Stsc242432g00004 | 780 | PRINTS | HIV Rev interacting protein signature | 487 | 506 | IPR001164 | GO:0005096 | |
Stsc242432g00004 | 780 | PRINTS | HIV Rev interacting protein signature | 529 | 550 | IPR001164 | GO:0005096 | |
Stsc242432g00004 | 780 | MobiDBLite | consensus disorder prediction | 442 | 460 | - | - | |
Stsc242432g00004 | 780 | Pfam | PH domain | 297 | 426 | IPR001849 | - | |
Stsc242432g00004 | 780 | Coils | Coil | 230 | 250 | - | - | |
Stsc242432g00004 | 780 | ProSiteProfiles | PH domain profile. | 295 | 428 | IPR001849 | - | |
Stsc242432g00004 | 780 | CDD | PH_ACAP | 298 | 432 | - | - | |
Stsc242432g00004 | 780 | SUPERFAMILY | BAR/IMD domain-like | 9 | 318 | IPR027267 | - | |
Stsc242432g00004 | 780 | SUPERFAMILY | Ankyrin repeat | 626 | 773 | IPR036770 | - | |
Stsc242432g00004 | 780 | SMART | arf_gap_3 | 475 | 607 | IPR001164 | GO:0005096 | |
Stsc242432g00004 | 780 | CDD | ArfGap | 479 | 594 | - | - | |
Stsc242432g00004 | 780 | Gene3D | - | 614 | 772 | IPR036770 | - | |
Stsc242432g00004 | 780 | ProSiteProfiles | Ankyrin repeat region circular profile. | 720 | 751 | - | - | |
Stsc242432g00004 | 780 | Gene3D | - | 289 | 440 | IPR011993 | - | |
Stsc242432g00004 | 780 | Coils | Coil | 19 | 39 | - | - | |
Stsc242432g00004 | 780 | ProSiteProfiles | BAR domain profile. | 4 | 228 | IPR004148 | GO:0005515|GO:0005737 | |
Stsc242432g00004 | 780 | Gene3D | Arfaptin homology (AH) domain/BAR domain | 8 | 254 | IPR027267 | - | |
Stsc242432g00004 | 780 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 475 | 607 | IPR001164 | GO:0005096 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc242432g00004 | Stsc-Chr242432 | 11893 | 21240 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc242432g00004 | 485 | 594 | C2H2 Transcription Factor Family | AT4G05330 | 41.441 | 2.07e-18 | 85.5 |