Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242427g00010 CAGGATTCTTTTTACCATAATCTGACTGAGGAGGAACTTGCTCGTGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTGGGCTATTGCTATGTGTTATGGATAAGTTGAAGCGTGGTGAGGCAGTAGATATTCCGAAGTACGACTTCAAGAGTTACAAGAGCGATATGTATCCAAAAAGAAGGGTAAACCCCTCCGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTCGATACAGATGCTGATGTTCGTCTGGCGAGAAGGATTAGGCGAGATACCGGCGAGAAGGGTCGGGATATTGCAGTAGTTCTTGATCAGTATTCAAAATTTGTGAAACCGGCTTTTGATGATTTTATTCTCCCAACAAAGAAGTATGCTGACATCATTATACCGCGTGGGGGAGATAATCATGTAGCCATTGACCTGATTGTACAGCATATCCGCACAAAGCTTGGTCAACATGACCTGTGTAAAATATATTCGAATTTATATGTCATTCAGTCAACTTTTCAGATACGGGGCATGCATACCCTGATACGTGATGCTCAGATAACAAAGCACGATTTTGTATTTTATTCTGACCGTTTGATCCGTTTGGTTGTTGAACATGGATTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTGGACTTCTGTAAGAGGTTGTGTGGCGTCTCTGTCATCAGAAGCGGGGAGAGTATGGAGAATGCTTTACGAGCATGCTGTAAAGGTATCAAGATCGGGAAAATTCTAATTCACAGAGAAGGTGACAACGGTCAGCAGCTAATATACGAAAAGCTTCCAAATGATATCTCGGATAGGCACGTGTTATTGTTGGATCCTATACTTGGAACAGGTAATTCGGCTGTACAAGCGATCTCTTTACTTATAAGAAAGGGTGTACCGGAGTCCAACATTATATTTCTTAACCTGATATCTGCACCTCAAGGTGTTCATGTGGTCTGCAAAAAGTTTCCTAGAATAAAAATAGTAACATCTGAGATCGAGATTGGTTTGAATAAAGATTATCGCGTCATTCCGGGCATGGGTGAGTTCGGGGACCGGTACTTTGGAACAGATGATGATGAGCAGTTGGTGACTCCTTCACAGTAG 1194 0.4188 QDSFYHNLTEEELARVQDYNFDHPDAFDTGLLLCVMDKLKRGEAVDIPKYDFKSYKSDMYPKRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTGEKGRDIAVVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYSNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPQGVHVVCKKFPRIKIVTSEIEIGLNKDYRVIPGMGEFGDRYFGTDDDEQLVTPSQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242427g00010 397 PANTHER URIDINE KINASE 1 296 - -
Stsc242427g00010 397 Gene3D - 1 170 IPR027417 -
Stsc242427g00010 397 CDD PRTases_typeI 244 359 IPR000836 -
Stsc242427g00010 397 SUPERFAMILY PRTase-like 170 387 IPR029057 -
Stsc242427g00010 397 Gene3D - 171 386 IPR029057 -
Stsc242427g00010 397 FunFam Uridine kinase 1 170 - -
Stsc242427g00010 397 PRINTS Uridine kinase signature 99 109 - -
Stsc242427g00010 397 PRINTS Uridine kinase signature 113 124 - -
Stsc242427g00010 397 PRINTS Uridine kinase signature 135 148 - -
Stsc242427g00010 397 PRINTS Uridine kinase signature 42 57 - -
Stsc242427g00010 397 FunFam Uridine kinase 171 386 - -
Stsc242427g00010 397 Pfam Uracil phosphoribosyltransferase 185 386 - -
Stsc242427g00010 397 CDD UMPK 1 167 IPR000764 -
Stsc242427g00010 397 Pfam Phosphoribulokinase / Uridine kinase family 7 155 IPR006083 GO:0005524|GO:0016301
Stsc242427g00010 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 160 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242427g00010 Stsc-Chr242427 22430 27669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242427g00010 2 389 PRT Gene Family AT4G26510 88.660 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242427g00010 K00876 - gmx:100527893 730.324