Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242423g00002 ATGAAAGATGGTATCTCCTCGGCGTCCCAGAAGAATGTTGTGGTGTTGGGAAATAAAAGGGGTTTTGCTGATACCATAGATGGATTTTCTCAGGGGAAGTTTGCTGGTAATACAGGGATAACTGCAATGTTATCACCTAGACCTTCTGGTGCACAGCCTACGGCAACGAAGGAAATGCCGAACAAGGTGTTACAAGAACAGCCTTGTGCAGCTAATGGAACTGGTCAAACTAGCCATACAGGCCCTTCTATCAGTGGCAGTGCCCCAGCTTCTAAGGCACAGGTGGTTGGTTGGCCTCCTATAAGATCATTTAGGAGAAATTCAATAGCAACCGCATCAAAGAACAATGATGAAGTGGATGGGAAACCTGGTTTGGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTCAGGAAGGTGGATCTCAGAAGTTATACATCATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCACTTGTTTTACCCTGGGTCAGTGTGGCTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAAAGCAAGCTGAGGGACCTTCTACATGGTTCAGAGTATGTCCTCACTTACGAGGATAAAGACGGGGATTGGATGCTTGTAGGGGACGTACCTTGGGAGATGTTCACCGACACTTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGTTTAGCTCCCAGGGCCATGGAGAAGTCCAAGAGCAGGTGTTAG 744 0.4731 MKDGISSASQKNVVVLGNKRGFADTIDGFSQGKFAGNTGITAMLSPRPSGAQPTATKEMPNKVLQEQPCAANGTGQTSHTGPSISGSAPASKAQVVGWPPIRSFRRNSIATASKNNDEVDGKPGLAALFVKVSMDGAPYLRKVDLRSYTSYQELSSALEKMFTCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRC 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242423g00002 247 MobiDBLite consensus disorder prediction 69 90 - -
Stsc242423g00002 247 SUPERFAMILY CAD & PB1 domains 127 228 - -
Stsc242423g00002 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 234 IPR003311 GO:0005634|GO:0006355
Stsc242423g00002 247 MobiDBLite consensus disorder prediction 69 92 - -
Stsc242423g00002 247 ProSiteProfiles PB1 domain profile. 127 231 IPR000270 GO:0005515
Stsc242423g00002 247 FunFam Auxin-responsive protein 122 239 - -
Stsc242423g00002 247 Gene3D - 124 241 - -
Stsc242423g00002 247 Pfam AUX/IAA family 13 238 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242423g00002 Stsc-Chr242423 15736 18959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242423g00002 129 232 B3 DNA Binding Superfamily AT5G37020 33.654 2.70e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc242423g00002 AUX_IAA 3e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242423g00002 K14484 - gmx:547502 417.157