Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242422g00002 ATGGCGAGGCTGAAACTCACTAACCTCGCCACCGATGAATCTGCTCTACTTGCCCTGCGGGATCACATCTCCCACGACCCCCCTAAAAGCTGGTCCACCAATACCTCCGTTTGCAACTGGCTTGGCGTCACTTGCGGCTCTACCCACCGCAGAGTAACCGCCTTGAATCTCTCATACATGTCTCTTATTGCCACCATCCCTCCCCATCTCGGAAACCTATCCTTCCTTGCTCACTTGCATCTCCAAAACAACTCCTTTCACGGCACTCTTCCTCGGGAGTTAGCAGCCTTACGCAGATTGAAAACCGTTAGCCTTCAGTTCAACGGCTTCAGCGGAGACCTCCCGTCATGGTTCTTCTCCCTCCCAAAACTAACAGCCATGGATCTAAGGTGGAACAGCTTCACTGGAACACTCCCAAGCTCTTTATTCAACGCATCAACTTCCTTGCAATACGTTGACGTTGGCGGTAACAAGCTTTGGGGCTCCCTACCCTCCAACTTCTTCCTATCTCCATCTCTTCAATTCTTGTCCGTGAATTTCAACCAAATATCAGGCACCCTCCCTTCCACTGTTCTCAACAACTCGCCACTGTTAGGTCTCGCTCTAACTGGAAATAACATATCTGGAGAGCTGCCACAACGTATCTTCCATAATCTTACTAACTTGGAAGGCCTTTACATATCTGAGAACGCCTTCTCCGGTGAAATCCCAACCACCTTGTTCAAGTGCAAGAACCTGCAAACTATATCTCTCTCCAAAAATAGTTTCACTGGAAACATACCACCAGAGATCGCCAACCTAACCAGCCTCACACAAATTTATCTTGGATTTAACAACTTTCGAGGTGAAATACCTTCTGATATCGGTAAACTACCGAATCTGGAGATTCTGGGTCTTCAGTCTGCCAACCTGAGTGGCAAGATTCCACCATCAATCTTTAATATTTCTACCTTGAAGCAAATAACTCTGGATGTTAATCATCTATCAGGCTCACTCCCCTCAAACTTCGGCTATATGCTTCCAAATCTTGAGCAGATCTTCATGAGCGACAATTATCTGAGTGGAACTATTCCAAGTTCATTAGGCAATGCCACTATGCTCACTCGGATAGACATGGCCTACAACTCATTTTCTGGATACATTCCTCACTCTTTGGCAAACTTAGCAAGTCTCAATTGGCTGAATCTTGCTGTAAATAATCTCAGTTCTGATCCAGAGCTTAGCATTATGACTTCTTTGAGCAGTTGTAGATATCTCCAAAAATTGCTCTTGAGGGACAATCCATCATTTAACTCTATCATTCCAAATTCGATTGGAAACCTTTCTACTCAGCTTAGCTTCTTGACACTCTCTGGGTGTTCAATGAGAGGCACCATTCCAGAAAGTATTGCCAACTTGAGCAGCTTAATAGACCTTGAACTTGATCAGAATCAGTTTGTTGGAACCATTCCTACTGGAATAGGGAAACTAAACAATCTGCAAGGTCTCTATTTGAGTGAAAACCAGTTCCAAAGATATGATCCACATGATCTATGTCAACTAAAGAGCTTGAATACATTAGACATGGGAAGAAACAAGTTCTCTGGTCCCATTCCATCTTGCTTAAGCAATCTTACATCATTGAGACAGCTTAGCATGACTTCAAATGCATTCACCTCAATCCCTTTCACCTTGTGGGGTTTATCGGATTTGCTGTTGTTAGACCTATCTTCAAATAATATAGGAGGGTCTCTCCCATCTGATATAGCAAATCTGAAAGCTATGACTTGGATGGACTTATCACGAAATCAATTGTCTGGTAACATCACAAGTAGCTTTGGAAATCTTGAGCGTCTGGTTAATTTATCTTTAGCTCAAAATAAATTTGAAAACCTCATCCCAGAATCATTTGGTCATATGGTAAGTTTGGAACTTCTTGACTTATCAAGAAACTCTTTGTCTGGGGTTATTCCCAGATCATTGGAAGCACTTGTGCATCTGAAATATTTCAATGTGTCTTTCAATAACTTAAAAGGGAAAATCCCTGATGGGGGACCTTTTGCAAACTTCTCTGCTCAATCTTACATGGGGAATAAAGAATTATGTGGTGCTCCACGTTTTCATTTCCCCGAATGTAAAACTGAAAGATCCCAAAAAAGGAATGCACATATTGTGTTGAAATATATCTTACCTGCAGCAATAGTTGCCACCCTTGTAGTGGCAGTCCTGTGCATCCTTAAATTCCGAAAGCGCAAGGTGATCAGCAATTCAGAGGTGGATCAATCAGGAGCAAGATGGAGAAGAATATCATACTATGAAATTCAGCAAGCAACAGATAGGTTCAGTGATGGCAACTTGCTTGGCATAGGGAGTTTTGGAAAAGTGTATAAAGGAGTACTCTCAGATGGGATGAATGTTGCAGTGAAAGTGTTTAATCTGGAACAAGAAGGATCATTTAGGAGTTTTGATGCCGAGTGTGAGATACTGTGCAAAGTCCGCCATCGAAACTTAATCAAAATCATTAGCAGCTGCAGCAACATGGACTTCAAGGCATTGATCCTAAGCTACATGGCAAATGGGAGTTTAGAGAAGTGGCTACATTCGGAACACCATTGCTTGAGTATGATCCAGAGGCTAAACATAATGATAGATGTTGCAGAAGCAATGGATTATCTGCATAATGGTGGTTCTGTACCAATTATACATTGTGATTTGAAACCCAGCAACATATTACTAGATGAAGACATGGTTGCCCATGTGACTGATTTTGGCATTGCAAAACTGCTCAGTGGAGATGATTCCATCACTCAAACCATGAATCTAGCCACAATAGGCTATATGGCCCCAGAGTATGGACTTGAGGGAACAGTGTCTAGGCAAGGTGATGTGTATAGTTATGGAATTTTACTTATGGAGACCTTCACACAGAAAAAACCCACTGATGAAATGTTTGTGGGAGAGTTTAGCATCAAACAGTGGGTGAAAGTGTTCTGCCCTGATTCAGTACTTGATATCATTGATGCAAAATTATTAGAGGAAGAAGGAGAACTAAATACTAAACAAGATTGCTTGTTGTCTATAATGACTCTAGCTCTTAATTGCTCAGCTGAGTCACCTGGAGAAAGGACAAATATGAATGACGTTGTCGTTGCCCTGAAGAAGATTAAAATATTACTCTTGAACTAA 3165 0.4196 MARLKLTNLATDESALLALRDHISHDPPKSWSTNTSVCNWLGVTCGSTHRRVTALNLSYMSLIATIPPHLGNLSFLAHLHLQNNSFHGTLPRELAALRRLKTVSLQFNGFSGDLPSWFFSLPKLTAMDLRWNSFTGTLPSSLFNASTSLQYVDVGGNKLWGSLPSNFFLSPSLQFLSVNFNQISGTLPSTVLNNSPLLGLALTGNNISGELPQRIFHNLTNLEGLYISENAFSGEIPTTLFKCKNLQTISLSKNSFTGNIPPEIANLTSLTQIYLGFNNFRGEIPSDIGKLPNLEILGLQSANLSGKIPPSIFNISTLKQITLDVNHLSGSLPSNFGYMLPNLEQIFMSDNYLSGTIPSSLGNATMLTRIDMAYNSFSGYIPHSLANLASLNWLNLAVNNLSSDPELSIMTSLSSCRYLQKLLLRDNPSFNSIIPNSIGNLSTQLSFLTLSGCSMRGTIPESIANLSSLIDLELDQNQFVGTIPTGIGKLNNLQGLYLSENQFQRYDPHDLCQLKSLNTLDMGRNKFSGPIPSCLSNLTSLRQLSMTSNAFTSIPFTLWGLSDLLLLDLSSNNIGGSLPSDIANLKAMTWMDLSRNQLSGNITSSFGNLERLVNLSLAQNKFENLIPESFGHMVSLELLDLSRNSLSGVIPRSLEALVHLKYFNVSFNNLKGKIPDGGPFANFSAQSYMGNKELCGAPRFHFPECKTERSQKRNAHIVLKYILPAAIVATLVVAVLCILKFRKRKVISNSEVDQSGARWRRISYYEIQQATDRFSDGNLLGIGSFGKVYKGVLSDGMNVAVKVFNLEQEGSFRSFDAECEILCKVRHRNLIKIISSCSNMDFKALILSYMANGSLEKWLHSEHHCLSMIQRLNIMIDVAEAMDYLHNGGSVPIIHCDLKPSNILLDEDMVAHVTDFGIAKLLSGDDSITQTMNLATIGYMAPEYGLEGTVSRQGDVYSYGILLMETFTQKKPTDEMFVGEFSIKQWVKVFCPDSVLDIIDAKLLEEEGELNTKQDCLLSIMTLALNCSAESPGERTNMNDVVVALKKIKILLLN 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242422g00002 1054 FunFam Nuclear pore complex protein NUP107 9 165 - -
Stsc242422g00002 1054 SMART serkin_6 774 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242422g00002 1054 PANTHER OS04G0122200 PROTEIN 279 1050 - -
Stsc242422g00002 1054 ProSitePatterns Protein kinases ATP-binding region signature. 780 802 IPR017441 GO:0005524
Stsc242422g00002 1054 Gene3D Transferase(Phosphotransferase) domain 1 850 1051 - -
Stsc242422g00002 1054 SUPERFAMILY RNI-like 332 675 - -
Stsc242422g00002 1054 FunFam Leucine-rich repeat receptor protein kinase EMS1 310 407 - -
Stsc242422g00002 1054 FunFam Leucine-rich repeat receptor protein kinase EMS1 214 309 - -
Stsc242422g00002 1054 FunFam Serine-threonine protein kinase plant-type 754 849 - -
Stsc242422g00002 1054 Gene3D Ribonuclease Inhibitor 242 339 IPR032675 -
Stsc242422g00002 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672|GO:0006468
Stsc242422g00002 1054 Gene3D Ribonuclease Inhibitor 340 406 IPR032675 -
Stsc242422g00002 1054 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 850 1054 - -
Stsc242422g00002 1054 Pfam Protein tyrosine and serine/threonine kinase 778 1044 IPR001245 GO:0004672|GO:0006468
Stsc242422g00002 1054 Gene3D Ribonuclease Inhibitor 169 241 IPR032675 -
Stsc242422g00002 1054 SUPERFAMILY Protein kinase-like (PK-like) 750 1045 IPR011009 -
Stsc242422g00002 1054 Pfam Leucine rich repeat N-terminal domain 10 45 IPR013210 -
Stsc242422g00002 1054 Gene3D Ribonuclease Inhibitor 9 167 IPR032675 -
Stsc242422g00002 1054 SMART LRR_typ_2 538 560 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 121 145 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 171 194 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 267 291 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 561 585 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 490 514 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 73 97 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 609 632 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 340 364 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 219 243 IPR003591 -
Stsc242422g00002 1054 SMART LRR_typ_2 633 656 IPR003591 -
Stsc242422g00002 1054 Gene3D Ribonuclease Inhibitor 407 714 IPR032675 -
Stsc242422g00002 1054 Pfam Leucine rich repeat 469 527 IPR001611 GO:0005515
Stsc242422g00002 1054 Pfam Leucine rich repeat 611 670 IPR001611 GO:0005515
Stsc242422g00002 1054 Pfam Leucine rich repeat 341 401 IPR001611 GO:0005515
Stsc242422g00002 1054 Gene3D Phosphorylase Kinase; domain 1 736 849 - -
Stsc242422g00002 1054 ProSiteProfiles Protein kinase domain profile. 774 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242422g00002 1054 CDD STKc_IRAK 780 1048 - -
Stsc242422g00002 1054 FunFam Inactive leucine-rich repeat receptor-like protein kinase 411 705 - -
Stsc242422g00002 1054 SUPERFAMILY RNI-like 50 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242422g00002 Stsc-Chr242422 4274 9380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242422g00002 586 691 Receptor kinase-like Gene Family AT3G47570 37.383 2.12e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc242422g00002 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242422g00002 - K13420 adu:107467292 1429.85