Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242419g00002 ATGGACCCCAAATCTTGCACCGTTATCTCACCACCGTCGTTACTAGCCACCGCCTACTGTGACTTCCGCCGTACCCCGACGCCGGAGCTCGATCTCGATGTCGAAGAACTCATGAAGAGTTGGATGGTTGTCGCGGCACCGAACGAGCAAGAAGAATACGCCGACGACAACGACATGAAACCTTCAATGACGGATCCGTTCATCGGCAGCGGCGGCGGTGACGGTGGCGTTCTTTCCGCCTCTGCCTCCGCCGGTTTCCATAACCCGGATTTGGTGGTGACTACATTTTCAACTTGTACTAGCGGAGTGACAGATAATAATAACAATATTATTAATTATAACAATAATAATAATCATCATCAGCATCAGCAGCTTCTGTGCTCTCAGAACCTCACTCGCAACCATTCAAACATCTCTGCAACTATTGATTCTCAGTCATCCATTTGTGGTACAGCTACTGTTGGAAGTCCAGTGTCAGCAAATAAGCCGAACGGCAGCGGAGGTGGTGAAGGAAAAGGAGGGACGACGAGTGGTTCGTCGTCACGTGAGCCGTCCGACGAAGATGATGAGGCAGGTCCATGTGAGCAAAGCACAAACCCTCTTGATATGAAGCGCCTCAGAAGGAAGGTTTCTAATCGCGAGTCTGCAAGGAGGTCCAGAAGAAGGAAGCAAGCTTATTTGACTGACCTTGAGTCCCAGGTTGAACAGCTGAGGCTGGAAAATGCAACTCTATACAAGCAGCTAACAGATGCTAGCCAACACTTTCGTGATGCTGATACAAATAACCGAGTCCTAAAATCAGATGTTGAAGCTTTGAGAGCTAAGGTGAAACTAGCTGAGGACATGGTTGCTAGAAGCTCTTTCACCAATCTGAACAACCAGCTACTTCATCAGAATCATCAGAGGGGTCAGATGAACACCAACAACAACAATTTGCGGGGCGTGGCGCATGTGTCGCCAACCATCACTGTCCATGGAAATGACTCCTCATATGGAAGCTGCATCACCAGTGTTGATGGACAAAACTCAGCTCATCTTGGAGGACTAGCTGGAAACTTGGACATAACTAATAACAGTAATAATTATAGTGATTATAATGCAGCCATAAGCGATGCTGTTAGCTCTGTCACTAACATATGGCCATGA 1146 0.4764 MDPKSCTVISPPSLLATAYCDFRRTPTPELDLDVEELMKSWMVVAAPNEQEEYADDNDMKPSMTDPFIGSGGGDGGVLSASASAGFHNPDLVVTTFSTCTSGVTDNNNNIINYNNNNNHHQHQQLLCSQNLTRNHSNISATIDSQSSICGTATVGSPVSANKPNGSGGGEGKGGTTSGSSSREPSDEDDEAGPCEQSTNPLDMKRLRRKVSNRESARRSRRRKQAYLTDLESQVEQLRLENATLYKQLTDASQHFRDADTNNRVLKSDVEALRAKVKLAEDMVARSSFTNLNNQLLHQNHQRGQMNTNNNNLRGVAHVSPTITVHGNDSSYGSCITSVDGQNSAHLGGLAGNLDITNNSNNYSDYNAAISDAVSSVTNIWP 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242419g00002 381 Coils Coil 262 282 - -
Stsc242419g00002 381 MobiDBLite consensus disorder prediction 159 224 - -
Stsc242419g00002 381 CDD bZIP_plant_GBF1 205 256 IPR045314 GO:0003700|GO:0006355
Stsc242419g00002 381 SUPERFAMILY Leucine zipper domain 204 253 IPR046347 GO:0003700|GO:0006355
Stsc242419g00002 381 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 207 222 IPR004827 GO:0003700|GO:0006355
Stsc242419g00002 381 PANTHER BASIC LEUCINE ZIPPER 63 121 358 - -
Stsc242419g00002 381 SMART brlzneu 200 264 IPR004827 GO:0003700|GO:0006355
Stsc242419g00002 381 Pfam bZIP transcription factor 203 250 IPR004827 GO:0003700|GO:0006355
Stsc242419g00002 381 Gene3D - 203 257 - -
Stsc242419g00002 381 Coils Coil 220 247 - -
Stsc242419g00002 381 FunFam BZIP transcription factor 202 253 - -
Stsc242419g00002 381 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 202 265 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242419g00002 Stsc-Chr242419 17968 25510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242419g00002 143 381 bZIP Transcription Factor Family AT5G24800 51.867 1.45e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc242419g00002 bZIP_1 6.3e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242419g00002 K25784 - gmx:778193 291.197