Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242412g00006 ATGGCTACACAGGGAAAAGTCATCACCTGCAAAGCTGCTGTGGCTTGGGAACCAAACAAGCCATTGAGCGTGGAGGATGTTGACGTGGCTCCACCGCAGAATGGAGAAGTCAGAATCAAGATTCTATACGCTGCTCTCTGCCACACAGATGCTTATACTTGGAGTGGCAAGGATCCAGAAGGTCTATTCCCCTGTATACTTGGTCATGAGGCGGCTGGGATTGTGGAAAGTGTCGGCGAAGGTGTTACTTCGGTTCAGCCTGGAGATCACGTCATACCCTGCTACCAAGCTGAATGTGGGGAGTGCAAGTTCTGCAAATCTGGCAAAACAAACCTCTGCGGCAAGGTTCGTTCGGCCACCGGAGTTGGTGTCATGCTGAGCGATCGCAAGAGTCGTTTCTCGGTCAATGGAAAGCCTATCTATCATTTCATGGGAACTTCCACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTGGCTAAGATTGATCCCAATGCACCGTTGGAGAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACTGGCCTTGGAGCTGTTTGGAACACAGCAAAGGTGGAAGCAGGTTCAATTGTTGCTGTTTTTGGCCTCGGAACTGTTGGACTTGCTGTTGCGGAGGGTGCAAAAGCTGCCGGTGCATCACGGATTATTGGCATAGATATCGATCGCAGTAAGTTTGAAAGAGCAAAGAATTTTGGAGTCACTGAGTTTGTCAATCCAAAGGAACATGAAAAACCAATTCAGCAGGTCATAGCTGATCTCACAGATGGTGGAGTTGATTACAGCTTCGAGTGCATTGGAAATGTCTCGGTTATGAGGGCTGCTTTGGAATGCTGCCATAAGGGCTGGGGTACTTCAGTAATTGTAGGTGTCGCGGCATCAGGTCAGGAAATATCGACTCGGCCCTTCCAGTTGGTGACCGGCCGAGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAAGTGCCTTGGCTTGTTGACAAGTACATGAAGAAGGAAATCAAGGTTGATGAGTACATTACTCACAGTTTGAACCTTGCTGATATTAACAAAGCATTTGACCTTTTGCATGAAGGAGGGTGTCTCCGTTGTGTTCTTGCATTGCATGTATGA 1140 0.4772 MATQGKVITCKAAVAWEPNKPLSVEDVDVAPPQNGEVRIKILYAALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTSVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPNAPLEKVCLLGCGVPTGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDRSKFERAKNFGVTEFVNPKEHEKPIQQVIADLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHSLNLADINKAFDLLHEGGCLRCVLALHV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242412g00006 379 SUPERFAMILY GroES-like 2 198 IPR011032 -
Stsc242412g00006 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Stsc242412g00006 379 Gene3D - 13 372 - -
Stsc242412g00006 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Stsc242412g00006 379 Gene3D - 182 320 - -
Stsc242412g00006 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
Stsc242412g00006 379 Pfam Zinc-binding dehydrogenase 206 327 IPR013149 -
Stsc242412g00006 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Stsc242412g00006 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Stsc242412g00006 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Stsc242412g00006 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Stsc242412g00006 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Stsc242412g00006 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242412g00006 Stsc-Chr242412 17815 23288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242412g00006 10 331 Monolignol Biosynthesis Gene Families AT1G72680 27.744 4.70e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242412g00006 K00121 - gmx:100793008 720.309