Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242411g00002 ATGGGAACCTGCATGGAGAATTTTAATGAGGAGGAACACATTTTTCGCAGTAAATTCAAGCCGGTCGAAGTCCCGGACGACGTTATGCTGCCGGAATTCGTGCTCCAAAACGCCGAATTATACGCCAACAAGGTTGCATTTGTGGATGTTGTGAGTGAGAAAGCTATGACTTATAGTGAGGTGGTAAGAGACACAAGGAGATTTTCAAAGGCATTAAGGTCTCTTGGTGTGAGGAAGGGGAATGTTGTGATTGTGGTGCTTCCAAATGTGGTAGAATATGGAGTTATTGCTTTGGGGATTATGGCTTCTGGTGGTGTTTTCTCAGGAGCAAATCCAGCATCACATGTTTCAGAGATTAAGAAGCAAGCAGATTCTGCTGATGCCAAATTAATTGTCACAGATTCCACAAACTATGACAAGGTGAAAGCTCTAGAGCTGCCTGTAATTGTGCTAGCAGATGAGCCTATTGAGGAAGCTATGAACTACAACAAACTACTCGAAGCCGCGGATCGTGCCGGCGATGATTCATCGGCGAAAAAACCAGTTCATCAGAATGATCTATGTGCCATGCCATTCTCATCAGGCACCACAGGGCTGTCAAAGGGTGTGATGCTTACACACAGAAATGTGGTAGCAAATCTTTGCTCTACACTGTTTGGTGTGGAAGAAGAAATGATTGGAAATGTTACAACACTAGGACTAATCCCATTCTTTCACATCTATGGCATAACTGGAATATGTTGTGCCACTCTTAGGAACAAAGGGAAAGTTGTTGTCATGGGAAGGTTTGATTTGAAGACATTTATTAGTGCATTGATCAGACATGAAGTGAATTTTGCACCAATTGTGCCCCCAATTATTCTTGGATTGGTGAAGAATCCTATAGTGGATGAATTTGATCTTAGCAAGCTTAAACTTCAGGCTGTTATGACTGCAGCAGCTCCACTTGCACCAGAAGTTCTTAATGCCTTCAAACAGAAGTTCCCTGGTGTTGTTGTCCAAGAGGCATATGGACTAACTGAGCATAGCTGCATCACACTTACCCATGCAATAAAAGATGCAGGGACTCTACACAAAAATTCAGTGGGGTTCATCCTCCCAAATTTGGAAGTTAAATTTATTGATCCTGATACTGGTAGATCCCTCCCTAGGAGCACACCTGGGGAAATTTGTGTCAGAAGCCAATGTGTGATGCAAGGTTATTATAAACAGGTTGATGAAACTGCTCATACAATTGACAAAAATGGATGGCTTCACACTGGGGATGTAGGATACATAGATGATGATGAGAATATATTTATTGTTGATCGCATCAAGGAGTTAATTAAATACAAAGGATTCCAAGTAGCTCCAGCTGAGTTAGAGGCCATTTTGTTATCTCATCCGCGGGTCGAAGATGCCGCCGTGGTGCCGTTGCCAGATGAAGAAGCAGGGGAAATCCCTGCTGCTAGTGTTGTTCTGAGCAGGGGTGCAAGAGTGAGTGAAGAGGATATCATGAACTATGTTGCTTCAAATGCTGCACATTACAAGAAAGTGAGGGTGGTGCACTTTGTAGAAACCATACCAAAATCACCTTCTGGGAAGATAATGAGAAGGCTTATCAAGGAGAGAATGGTCCAGAAAATGAAGACAAATAAATCCAACACTTCTTAA 1653 0.4265 MGTCMENFNEEEHIFRSKFKPVEVPDDVMLPEFVLQNAELYANKVAFVDVVSEKAMTYSEVVRDTRRFSKALRSLGVRKGNVVIVVLPNVVEYGVIALGIMASGGVFSGANPASHVSEIKKQADSADAKLIVTDSTNYDKVKALELPVIVLADEPIEEAMNYNKLLEAADRAGDDSSAKKPVHQNDLCAMPFSSGTTGLSKGVMLTHRNVVANLCSTLFGVEEEMIGNVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLKTFISALIRHEVNFAPIVPPIILGLVKNPIVDEFDLSKLKLQAVMTAAAPLAPEVLNAFKQKFPGVVVQEAYGLTEHSCITLTHAIKDAGTLHKNSVGFILPNLEVKFIDPDTGRSLPRSTPGEICVRSQCVMQGYYKQVDETAHTIDKNGWLHTGDVGYIDDDENIFIVDRIKELIKYKGFQVAPAELEAILLSHPRVEDAAVVPLPDEEAGEIPAASVVLSRGARVSEEDIMNYVASNAAHYKKVRVVHFVETIPKSPSGKIMRRLIKERMVQKMKTNKSNTS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242411g00002 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Stsc242411g00002 550 Gene3D - 440 544 IPR045851 -
Stsc242411g00002 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 16 439 - -
Stsc242411g00002 550 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Stsc242411g00002 550 CDD 4CL 24 532 - -
Stsc242411g00002 550 SUPERFAMILY Acetyl-CoA synthetase-like 9 540 - -
Stsc242411g00002 550 Pfam AMP-binding enzyme 36 444 IPR000873 -
Stsc242411g00002 550 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Stsc242411g00002 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 536 - -
Stsc242411g00002 550 Gene3D - 12 439 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242411g00002 Stsc-Chr242411 6051 9568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242411g00002 5 539 Monolignol Biosynthesis Gene Families AT1G62940 70.872 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242411g00002 K01904 - gmx:100811418 899.427