Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242404g00002 ATGGTTCAGCGTCTTACTTATCGCAAGCGCCATAGCTATGCCACCAAATCCAACCAGCACCGCGTTGTCAAAACCCCCGGTGGGAAGCTGGTTTACCAGAGCACCAAGAAGAGAGCGAGTGGACCAAAATGCCCTGTCACCGGAAGGAGGATCCAAGGGATTCCACACTTGAGACCTGCTGAATACAAGAGATCTAGGTTGCCTAGAAACCGCCGCACAGTGAACCGTGCCTATGGAGGTGTATTGTCCGGAGGAGCAGTTAGAGAAAGGATTATCCGTGCCTTCCTTGTTGAGGAACAAAAAATTGTGAAGAAGGTGTTGAAGATCCAGAAGGCAAAAGAAAAGCAAGCATCAAGGAGTTAA 363 0.4931 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGRRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASRS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242404g00002 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc242404g00002 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc242404g00002 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc242404g00002 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc242404g00002 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Stsc242404g00002 120 Gene3D - 1 37 - -
Stsc242404g00002 120 Gene3D - 39 120 - -
Stsc242404g00002 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 116 IPR008195 GO:0003735|GO:0005840|GO:0006412
Stsc242404g00002 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242404g00002 Stsc-Chr242404 8223 9842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242404g00002 1 117 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 90.598 2.70e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242404g00002 K02915 - vvi:100241433 215.698