Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242385g00001 ATGCTTGCTCTTCATCTTCCTCAGAAAAAAGCTTGCAACTTTTTCTTCTGCATGGTGGTGGTAGTGATGATCACAGTGTGTGACGGTGCTACAGACCCAAATGATCTCAAAATTCTGAATGATTTCAGAGAAGGGTTGCTAAATCCTGAGCTTCTCAAATGGCCAGAGAATGGAGTAGGTGACCCGTGTGGCAATCCTCCATGGCCTTATGTGTACTGCAATGGTGACAGGGTGACTCAGATTCAGTCAAAGAATCTTGGTCTCAAAGGTTCACTCCCTCAGAATTTGAACCAACTCACAGAACTCCAGAATCTAGGACTCCAAAGGAACAACCTCAGTGGGGCTTTACCAAGTTTCAATGGATTGTCCAAATTGGAATATGCTTTCTTGGATTACAATGAATTTGACACAATCCCTTCTGATTTCTTCAAGGGACTCACAAACATAAGGATCTTGACTCTGGAGATGAACCCTTCTTTGAATGCAACCACAGGGTGGTCTTTTCCTATGGATTTGAAAGATTCATTGCAGTTGATCAATCTCTCTTTTGTGCACTGTAACTTGGTTGGACCTTTGCCTGATTTTCTAGGCACATTGCCTTCACTTCTGAATCTGAGGCTCTCATACAACAAAATCTCTGGTGGAATTCCAAGTAGTTTTGGCCAATCTTCAATTCAGGTTTTGTGGCTTAATAATCAAGAAGGTGGTGGCATGAGTGGCTCTATTGATGTTATTGCCTCTATGACTTTTCTTACTCAGCTATGGCTTAATGGAAACAAGTTCAATGGTGAAATTCCGCAGAACATTGGGAATTTAACTTCCCTGAAGGATATCAACCTCAATGGAAACCAACTTGTTGGTTTGATTCCGGAATCAATGGCAAATATGAACGTTGATAAAGTTGATTTAAGCAATAACATGCTAATGGGGCCAATACCAAGGTTTAAGGCAGCTACACAAGTATCTTATACTTCAAATTTCTTTTGTCAAAGTAAGCCTGGGATTCAATGTTCTCCTGAAGTTGATGTACTGATTGATTTTCTGCATAATCTGAACTACCCTTCAATTCTGAGTTCTGAATGGTCTGGTAATGATCCTTGTGGAGGGAACTGGATTGGATTGAGCTGCAATCAGAACTCTGAGGTATCTCTTATCAATTTGCCTAGGAGAAATCTTAGTGGTACATTAACTCCTTCAATTGCTAAGTTGAATTCACTTGTTAGGATTATGCTTGCACAAAATAATATAAGTGGCACAGTTCCTGGTAATTTTACTGAATTGAAATCATTGAGTTTGTTGGATTTGAGTTATAACAATGTTGAGCCTCCATTGCCAAAGTTCAATGATGGTGTGAAGGTTGTTATTGATGGAAACCCTCTTTTTGCTGATCAACATGGAAATAGTACCTCACCTATTAGTAGTCCACAACCTTCACCCTCGAATCCGAATCCGATGTCACCACAACCTCTGCTATCTCCACCGTCTAAACCAAAACCAAAACCAAAGCCAACACCCTCCCATGTTACACCTTCCCCTGCTCCGATTCAAAGATCAAATGGCTTGAAAAGATCCAAATTGGGATTATTACTTGGAGGTGTTGGAATCTTTACATTTGTGGCTATTTTGCTTGTTTCTCTCTTTGTGTGTCTTTTGAAGAAGAAAAAGGCTTCTAGAAATCTTAATATTCACACTCATGATGCATATAATCCAGAAACAACGGTGAAGTTTGCAGTTTCGAATTGTGACACTGAAACCAAGTCAACAAAGACAAGGATAAGTAATGTGAGCAACCTCAGTGGTGAAACTGAAACCACTCACATGAGTGAGTCTGGAAACTTTGTCATATCAGTACAAGTTTTGCGCGAGGTCACCAAGGATTTCGCCGCCGAAAATGAGCTAGGCCGAGGCGGTTTTGGAACTGTCTACAAGGGTGAGCTAGGAGATGGAACCAAGATAGCAGTGAAGAGAATGGAGAATAGAGCTATCAGCAGTAAGGGAGTGGATGAATTCCAGGCCGAAATAGCCGTGCTTTCTAAGGTCCGTCACCGGCATTTGGTGTCCCTTCTAGGCCACGCCATAGAAGGAAATGAGAAGCTATTGGTTTATGAATACATGCCTTTAGGTGCTCTAAGCAAGCATCTTTTTCAATGGGAAAGATTGAAATTGGAGCCTCTGTCTTGGTCTCAGAGGCTTGTGATAGCACTTGATGTTGCAAGAGGAATGGAATACCTTCATGGTCTTGCTCGCCAGACCTTCATACATCGAGATCTCAAGTCTTCTAACATTCTACTTGGTCATGATTTTCGGGCAAAAGTTTCGGATTTCGGTCTTGTGAAACTTGCCCCTGATGGGAACAAGTCTGTGGCTACAAAACTTGCCGGAACCTTCGGATACCTCGCCCCTGAATATGCAGTGATGGGTAAAATCACCACAAAAGTTGATGTGTTCAGTTACGGTGTGGTGTTGATGGAACTTCTAACCGGACTAATGGCTCTGGACGAGAGCCGGCCGGAGGAGAATCGGTACTTAGCCGAATGGTTTTGGCAAATAAAATCAAGCAAGGAAAAGCTTCTTGCAGCCATGGATCCTGCTCTCAATGTGAGTCAAGACATATTCGAGAGCATCTACATTGTCGCGGAGCTTGCTGGACACTGCACGGCGAGGGAAGCAAACCATCGGCCGGACATGAGTCATGCGGTCAACGTGCTATCAGCATTGGTGGAGAAATGGCAGCCGGTGAACGAAGAAGTCAACGGTGGGTCCGGCATTGACTACAATCAACCACTTTCACAGATGTTGAAAGTATGGAAGGAAGCAGAAGGAAGAGAAGTTGGGTACACTAGTCTTGAAGATAGTAAAGGAAGTATACCAGCTAAGCCTACTGGTTTTGCTGATTCCTTCACTTCTGCTGATGCTAGATGA 2922 0.4274 MLALHLPQKKACNFFFCMVVVVMITVCDGATDPNDLKILNDFREGLLNPELLKWPENGVGDPCGNPPWPYVYCNGDRVTQIQSKNLGLKGSLPQNLNQLTELQNLGLQRNNLSGALPSFNGLSKLEYAFLDYNEFDTIPSDFFKGLTNIRILTLEMNPSLNATTGWSFPMDLKDSLQLINLSFVHCNLVGPLPDFLGTLPSLLNLRLSYNKISGGIPSSFGQSSIQVLWLNNQEGGGMSGSIDVIASMTFLTQLWLNGNKFNGEIPQNIGNLTSLKDINLNGNQLVGLIPESMANMNVDKVDLSNNMLMGPIPRFKAATQVSYTSNFFCQSKPGIQCSPEVDVLIDFLHNLNYPSILSSEWSGNDPCGGNWIGLSCNQNSEVSLINLPRRNLSGTLTPSIAKLNSLVRIMLAQNNISGTVPGNFTELKSLSLLDLSYNNVEPPLPKFNDGVKVVIDGNPLFADQHGNSTSPISSPQPSPSNPNPMSPQPLLSPPSKPKPKPKPTPSHVTPSPAPIQRSNGLKRSKLGLLLGGVGIFTFVAILLVSLFVCLLKKKKASRNLNIHTHDAYNPETTVKFAVSNCDTETKSTKTRISNVSNLSGETETTHMSESGNFVISVQVLREVTKDFAAENELGRGGFGTVYKGELGDGTKIAVKRMENRAISSKGVDEFQAEIAVLSKVRHRHLVSLLGHAIEGNEKLLVYEYMPLGALSKHLFQWERLKLEPLSWSQRLVIALDVARGMEYLHGLARQTFIHRDLKSSNILLGHDFRAKVSDFGLVKLAPDGNKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEENRYLAEWFWQIKSSKEKLLAAMDPALNVSQDIFESIYIVAELAGHCTAREANHRPDMSHAVNVLSALVEKWQPVNEEVNGGSGIDYNQPLSQMLKVWKEAEGREVGYTSLEDSKGSIPAKPTGFADSFTSADAR 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242385g00001 973 Gene3D Ribonuclease Inhibitor 339 464 IPR032675 -
Stsc242385g00001 973 SUPERFAMILY Protein kinase-like (PK-like) 605 903 IPR011009 -
Stsc242385g00001 973 SMART LRR_typ_2 272 295 IPR003591 -
Stsc242385g00001 973 SMART LRR_typ_2 99 121 IPR003591 -
Stsc242385g00001 973 SMART LRR_typ_2 248 271 IPR003591 -
Stsc242385g00001 973 SMART LRR_typ_2 122 145 IPR003591 -
Stsc242385g00001 973 SMART LRR_typ_2 199 223 IPR003591 -
Stsc242385g00001 973 MobiDBLite consensus disorder prediction 464 519 - -
Stsc242385g00001 973 SMART serkin_6 627 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242385g00001 973 Pfam Protein tyrosine and serine/threonine kinase 630 901 IPR001245 GO:0004672|GO:0006468
Stsc242385g00001 973 CDD STKc_IRAK 633 903 - -
Stsc242385g00001 973 FunFam receptor protein kinase TMK1 705 922 - -
Stsc242385g00001 973 MobiDBLite consensus disorder prediction 949 973 - -
Stsc242385g00001 973 PANTHER OSJNBA0070M12.3 PROTEIN 16 973 - -
Stsc242385g00001 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Stsc242385g00001 973 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Stsc242385g00001 973 Pfam Leucine rich repeat N-terminal domain 339 377 IPR013210 -
Stsc242385g00001 973 ProSiteProfiles Protein kinase domain profile. 627 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242385g00001 973 FunFam Leucine-rich repeat receptor-like kinase 339 464 - -
Stsc242385g00001 973 MobiDBLite consensus disorder prediction 475 510 - -
Stsc242385g00001 973 ProSitePatterns Protein kinases ATP-binding region signature. 633 655 IPR017441 GO:0005524
Stsc242385g00001 973 Gene3D Ribonuclease Inhibitor 33 335 IPR032675 -
Stsc242385g00001 973 SUPERFAMILY L domain-like 339 446 - -
Stsc242385g00001 973 Gene3D Transferase(Phosphotransferase) domain 1 705 921 - -
Stsc242385g00001 973 Gene3D Phosphorylase Kinase; domain 1 586 704 - -
Stsc242385g00001 973 FunFam Receptor-like kinase TMK4 33 334 - -
Stsc242385g00001 973 SUPERFAMILY L domain-like 32 319 - -
Stsc242385g00001 973 FunFam receptor protein kinase TMK1 589 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242385g00001 Stsc-Chr242385 4642 8196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242385g00001 88 916 Receptor kinase-like Gene Family AT1G55610 29.025 2.86e-76 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc242385g00001 PK_Tyr_Ser-Thr 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242385g00001 K00924 - gmx:100815045 1284.63