Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242382g00001 ATGACGGTTCCACCAGACTCACCGGAACTTGATCTCGACAACCTCAAAGCACTCAAAATTCTAGGCAAAGGCGCCATGGGCACCGTCTTCCTCGTCCAACACACCACTACCTCCACCCAACTTGCACTCAAAGTCGTCCACAACGCAAACCCAGACTCCAACCGCCGGGCCCACTGGGAAACCCAAGTCCTATCCTGCCTCTCCCACCCCTTCCTCCCTTCCCTCCTCGGCACCTTCGAAACAAACCACTTGCTTGGCTGGGCCGTCCCTTACTGCCCCGGTGGCGACCTCAACGTCCTCCGCCACCGCCAAGTCGACCGCGTCTTCTCCCCCGCCGTCATCCGCTTCTACATCGCCGAGATCCTCTGCGCTCTGGACCACCTCCACTCCCTCGGCATCGCGTACCGCGACCTCAAACCTGAAAACGTACTTATACAACAAACTGGCCACGTCACCCTAACTGATTTTGACCTCTCACGCAACCTCACTCCCCCAAAACAGAAAACGGTTACAAACCTCATTACAGATCCCAAGGCCTCTAACAGAAAACATGACACGTGTCACCGCCAGATCCAAAAAGGTCTCAAGAAGGCCAAGTCCGCTAGAGTCAGTCCTGTTAGTCGTCGCAGGCCGAGTTTTTCTGCCGGAGAAAGGTCGAACTCCTTCGTCGGCACGGAGGAGTACGTGGCGCCGGAGGTGGTGCGCGGCGACGGCCATGAATTCTCCGTGGATTGGTGGGCCCTAGGAGTGCTGACGTACGAAATGCTGTACGGAACGACGCCGTTTAAGGGGAAGAACAGAAAGGAGACGTTTCGGAACGTGTTGATGAAGAAGCCTGAGTTCGTTGGGAAGCAGAAGACGGTGTTGACGGATTTGATCTCGCGGTTGCTGGAGAAGGAACCTTCTAGAAGGTTGGGTTACGTTGGTGGCTCGAGTGAGATCAAGGAACATGAGTTTTTCAGAGGTCTCAAGTGGGACCTCCTCACGGAGGAGGTGGTTATGAGGCCGCCGTTTATTCCGTCCAGAGATGATGATGACGGCGACTTCACGGAGAAACTGACCGGTGCCGGTGCCGCTGAAGGAGTGGACATAAGGGATTACTTTCAGAGGTTGAAGGCGCCGCCGCAGTCACCATCAGCGTCGCCTTCTAGTGAGCTTCACCGGAAGAATGTTTCGTGGACAGAATTTTGA 1191 0.5558 MTVPPDSPELDLDNLKALKILGKGAMGTVFLVQHTTTSTQLALKVVHNANPDSNRRAHWETQVLSCLSHPFLPSLLGTFETNHLLGWAVPYCPGGDLNVLRHRQVDRVFSPAVIRFYIAEILCALDHLHSLGIAYRDLKPENVLIQQTGHVTLTDFDLSRNLTPPKQKTVTNLITDPKASNRKHDTCHRQIQKGLKKAKSARVSPVSRRRPSFSAGERSNSFVGTEEYVAPEVVRGDGHEFSVDWWALGVLTYEMLYGTTPFKGKNRKETFRNVLMKKPEFVGKQKTVLTDLISRLLEKEPSRRLGYVGGSSEIKEHEFFRGLKWDLLTEEVVMRPPFIPSRDDDDGDFTEKLTGAGAAEGVDIRDYFQRLKAPPQSPSASPSSELHRKNVSWTEF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242382g00001 396 MobiDBLite consensus disorder prediction 371 396 - -
Stsc242382g00001 396 SMART serkin_6 15 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242382g00001 396 Gene3D Phosphorylase Kinase; domain 1 342 351 - -
Stsc242382g00001 396 FunFam Serine/threonine-protein kinase OXI1 96 164 - -
Stsc242382g00001 396 Gene3D Transferase(Phosphotransferase) domain 1 96 169 - -
Stsc242382g00001 396 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Stsc242382g00001 396 ProSiteProfiles Protein kinase domain profile. 15 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242382g00001 396 Gene3D Phosphorylase Kinase; domain 1 15 95 - -
Stsc242382g00001 396 PANTHER FLIPPASE KINASE 1-RELATED 9 343 - -
Stsc242382g00001 396 Gene3D Transferase(Phosphotransferase) domain 1 217 341 - -
Stsc242382g00001 396 MobiDBLite consensus disorder prediction 198 218 - -
Stsc242382g00001 396 MobiDBLite consensus disorder prediction 374 396 - -
Stsc242382g00001 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Stsc242382g00001 396 SUPERFAMILY Protein kinase-like (PK-like) 6 342 IPR011009 -
Stsc242382g00001 396 Pfam Protein kinase domain 17 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242382g00001 396 Pfam Protein kinase domain 216 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242382g00001 396 FunFam Serine/threonine-protein kinase OXI1 217 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242382g00001 Stsc-Chr242382 6738 8378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242382g00001 10 396 AGC Kinase Gene Family AT3G20830 58.374 4.47e-154 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc242382g00001 Pkinase 4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242382g00001 - - cave:132163960 511.531