Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242381g00003 ATGTTCCGCCAACAGCTGCAGAACATGGAAGAAGGTGCAGAATCGTTACGCACCAGATGCTGGAGATTCTACAAAGGGTGTAAAAAGTACACGGATGGGCTTTTAGATGCATGTGATGGAGACTTCAGCTTCGCAAGTGCCCTCGAAAATTTTGGGGGAGAACATTCTGATCCTTTATTTGTAACTTTGGGAGGGCCTGTTATGACCAAATTCTCTATGGCTTTGAGAGAAATCGGTACATACAAGGACTGTCTTAGGGCACAGGTGGAGCAGATGTTGACTGACCGACTACTTCACATTTACAACGTTGAGATAATGGATGTCAAGGAAGCTCGAAAGCGTTTTGACAAGGCTTGCATTGCATATGACCAGGCACGGGAGAGGTTTATGTCATTGAGAAAAAGTACTAGGCAGGATATCGTCATTGCAATAGAGGAGATTAGTGCTCTTCACAATGTCGAGGCCAAAAAAAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTAATGGATGCTCATCTTCAATACTTTCGACAGGGATATGAACTACTACATCAGTTGGAGCCTTTCATTGTTGAGGTTTTGTCTTATGTACAAAAAGCAAGGGAAAGTCACAATGAGGAGCAGGTTTCTCTATTTGAAAGAATGATAGAGTATAAGCAACTTGTTCATCAACAGAGTAAGTTCTCCTTGAAGGGATTTTATGATTCTCCTACTGGAGACTCTCCATTTTCTAGGATATCAAATGATGTGTTAGATGCAGTATCAGAATCTGTTACAAACGGAAAGGTTCAAATCATTCGAGAAGGGTATCTCTCAAAACGATCTTCCAATTTAAGAGGCGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGCAAACCATTGACTCAGTTCCATGGTCTAAATTCACAGAAGAGTCATACCTTTGATAATTCTTCTGGCATTTTGAGTCGGTTGTTATCTTCACATAGTCATGGAGTCAATGATGAAAAGCCTGTTGCTCGTCATACGGTGAACCTGCTCACATCAACAATCAAGGTTGATGCAGAACAGACAGATTTGAGATTCTGCTTTAGGATTGTTTCTCCATCAAAGGTCTTTACATTGCAGGCAGAAAATGCCTTAGATCAAAGGGATTGGATGGAAAAGATAACTGGAGTAATTGCATCCTTGTTAACTATACAAACACTGGGAAAGCCTGTCATAACTGGCTCAGAAGGTGTTGACTGGGATACTGGCAGCACACCTGATTCAATACAAAGTTCTTCTGATGAGGAAATAGCAGTAAATGTAGGTTTGGCATGCAAGATCATCAACTCCAACACAAATAGGTCACCTAGTGGCTTGCAACGGCATAAACACAGTACAAAATGTGAGAAGCCAATCGATGTTCTTCGAAGGGTTAATGGGAATGATAAATGTGCTGATTGTGGTAAAGCTGAACCAGACTGGGCATCCTTAAACCTCGGCATCCTTGTATGCATTGAATGCTCTGGTGTTCATCGAAATCTTGGTGTACATATATCCAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGATTCCTCAGTTTTAAGCATGTTTCAATCACTTGGAAATCTCTTTGCAAATTCAGTTTGGGAGGATTTATTGCATTCAAAAGCTACAAAAGATGAAACTCTTGATGGATCATCCAAGAATACCAAAACCAAGTTATTTCATGCAAGAAAACCTGCATACGATGATCCCATTTCGCTAAAGGAGAGGTTCATTCATGCAAAGTATTCTGAGAGAGTCTTCGTTCGCCAGACACCGAACAATCGTCTCCGTACAGTTGCACAACTGGTCTGGGAAAGCATCTTTGCCAATGACAAGAAATCAGTGTACCGGCATATTGTGAGATCCGACGTGGATGTCAATGCTTTAAATGGTCAAAAATTTGATGGAAATTCTCTCGCCATGCCTTCTTCGAGTAACTCAAGCATGTCATCTGTTACTGAAGACCAACTAAGGGAGGACATAAAAGATGGCTCAAGTGTGCTTCACTTGGCATGCCTTGTATGTGATGCTGGAATGCTGGAGCTGCTCCTACAACACGGTGCAGATATAAATGCCATCGATTCGATTGGTCGAACACCATTACATTACTGCATGCTTAGAGGGAGGATTGCAACTGCAAAATTGCTTATTTTAAGGGGGGCCAATACACATGTAGTAGATAAACAAGGCAAGACTCCTCTAATGCTTGCATCAGAACCTAGCAGTGAAATTGTTGCTCTCTTATCAAGCAGATGA 2298 0.4147 MFRQQLQNMEEGAESLRTRCWRFYKGCKKYTDGLLDACDGDFSFASALENFGGEHSDPLFVTLGGPVMTKFSMALREIGTYKDCLRAQVEQMLTDRLLHIYNVEIMDVKEARKRFDKACIAYDQARERFMSLRKSTRQDIVIAIEEISALHNVEAKKRFEFLEAVTGVMDAHLQYFRQGYELLHQLEPFIVEVLSYVQKARESHNEEQVSLFERMIEYKQLVHQQSKFSLKGFYDSPTGDSPFSRISNDVLDAVSESVTNGKVQIIREGYLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPLTQFHGLNSQKSHTFDNSSGILSRLLSSHSHGVNDEKPVARHTVNLLTSTIKVDAEQTDLRFCFRIVSPSKVFTLQAENALDQRDWMEKITGVIASLLTIQTLGKPVITGSEGVDWDTGSTPDSIQSSSDEEIAVNVGLACKIINSNTNRSPSGLQRHKHSTKCEKPIDVLRRVNGNDKCADCGKAEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMFQSLGNLFANSVWEDLLHSKATKDETLDGSSKNTKTKLFHARKPAYDDPISLKERFIHAKYSERVFVRQTPNNRLRTVAQLVWESIFANDKKSVYRHIVRSDVDVNALNGQKFDGNSLAMPSSSNSSMSSVTEDQLREDIKDGSSVLHLACLVCDAGMLELLLQHGADINAIDSIGRTPLHYCMLRGRIATAKLLILRGANTHVVDKQGKTPLMLASEPSSEIVALLSSR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242381g00003 765 Gene3D - 256 404 IPR011993 -
Stsc242381g00003 765 SUPERFAMILY PH domain-like 177 395 - -
Stsc242381g00003 765 ProSiteProfiles PH domain profile. 264 396 IPR001849 -
Stsc242381g00003 765 Pfam BAR domain of APPL family 2 208 IPR004148 GO:0005515|GO:0005737
Stsc242381g00003 765 Gene3D Arf GTPase activating protein 447 609 IPR038508 -
Stsc242381g00003 765 CDD BAR_SFC_plant 5 189 IPR035670 -
Stsc242381g00003 765 SMART PH_update 265 398 IPR001849 -
Stsc242381g00003 765 SUPERFAMILY ArfGap/RecO-like zinc finger 466 604 IPR037278 -
Stsc242381g00003 765 CDD ArfGap 469 596 - -
Stsc242381g00003 765 ProSiteProfiles Ankyrin repeat region circular profile. 677 708 - -
Stsc242381g00003 765 SMART arf_gap_3 466 609 IPR001164 GO:0005096
Stsc242381g00003 765 SUPERFAMILY Ankyrin repeat 676 762 IPR036770 -
Stsc242381g00003 765 Pfam Putative GTPase activating protein for Arf 469 603 IPR001164 GO:0005096
Stsc242381g00003 765 CDD PH_ACAP 267 400 - -
Stsc242381g00003 765 SMART 5bar 1 192 IPR004148 GO:0005515|GO:0005737
Stsc242381g00003 765 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 448 610 - -
Stsc242381g00003 765 Gene3D - 619 765 IPR036770 -
Stsc242381g00003 765 ProSiteProfiles Ankyrin repeat profile. 677 709 IPR002110 GO:0005515
Stsc242381g00003 765 Coils Coil 108 128 - -
Stsc242381g00003 765 ProSiteProfiles ARF GTPase-activating proteins domain profile. 466 609 IPR001164 GO:0005096
Stsc242381g00003 765 PANTHER CENTAURIN/ARF 1 763 IPR045258 GO:0005096
Stsc242381g00003 765 Pfam PH domain 266 395 IPR001849 -
Stsc242381g00003 765 SMART ANK_2a 710 739 IPR002110 GO:0005515
Stsc242381g00003 765 SMART ANK_2a 677 706 IPR002110 GO:0005515
Stsc242381g00003 765 Gene3D Arfaptin homology (AH) domain/BAR domain 1 225 IPR027267 -
Stsc242381g00003 765 ProSiteProfiles Ankyrin repeat profile. 710 742 IPR002110 GO:0005515
Stsc242381g00003 765 SUPERFAMILY BAR/IMD domain-like 1 287 IPR027267 -
Stsc242381g00003 765 PRINTS HIV Rev interacting protein signature 497 514 IPR001164 GO:0005096
Stsc242381g00003 765 PRINTS HIV Rev interacting protein signature 520 541 IPR001164 GO:0005096
Stsc242381g00003 765 PRINTS HIV Rev interacting protein signature 478 497 IPR001164 GO:0005096
Stsc242381g00003 765 Pfam Ankyrin repeats (3 copies) 682 763 IPR002110 GO:0005515
Stsc242381g00003 765 ProSiteProfiles Ankyrin repeat region circular profile. 710 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242381g00003 Stsc-Chr242381 8806 17042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242381g00003 478 613 C2H2 Transcription Factor Family AT4G21160 40.146 7.93e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242381g00003 K12489 - gmx:100797073 957.592