Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242377g00002 ATGGAAGTTCTTATGTCTCTGGCTGCAAAAGTAGCAGAGTATACTGTGGCACCTATTGGAAGGCAATTCAGTTATCTGATATTCTACAAAGCCAATTTTAAGGAGCTGAGTGAACTTGTTACTGATCTTGAGGGTAAAAGAGATGAAATCAAGCATCGTGTTCAGAACGAAAGAAGGAACGGGAAAACAATTGAAACTCGTGTGCAGAATTGGTTGAACAAAGTGGATGAAGCCATTCAAGAGGCAAATCAGCTTCAAAATGATGCTCGTCGTGAGAAGGCTGGGTGTTCTAGATGGTCATTTCCTAATGTCGTGACGCGCCATCAACTCAGTAGGAAAGCTACAAAGGTTACCAAAAATGTTGTTGAAGCACAAGGTGGCGGGAACTTTGACCGAGTAGCATATCTTCCTGAACTTGATGTAGGCTCAACCTCTGCTATAAGCCATAGTAAAGGCTTTGAGTCAAGGAAATCTATTCAGGAGAATATCTTGCATGCTCTAAGAGACACCAAAGTAAGCATGGTTGGAGTCTATGGACTTGGAGGCGTCGGTAAGACCACTCTAGTCGAAGAAGTTGCTCAAATAGCCAAGAAAGACAGGGTATTTGATTCGGTGGTTATGGCCACCATATCCAAAACACCAAACATCAAAACAATTCAAGAGGAGATTGCTGATAAGTTGGGTCTTCATTTTGAAGAGTTAACTGTTGCTGGCAGAGCACCTCGCCTATGCGAAAGAATCAAAATGGAGAAAACTATCCTTCTCATATTGGATGATATTTGGGAAGCTCTTGACTTGAAAAATGTAGGAATTCCATCTGAGGGTGAACACAGTGGCTGCAAAATATTGATGACTTCTAGAAATTCAGACCTGCTACGACTGATGGGTGTGAAAGAGAATTTTAAGCTACATGTTTTGAATGATGAAGAATCATGGAGCTTGTTCAAGTCTAAGGCTGATAATTTAGACAAAGAACCCGACAAGCATCAAGTTGCACTCCAATTGGCAAAAAAGTGTGCAGGATTGCCTATTCTCATAGTTACCACGGCGCGGTCATTGATGGATCAAAACATTCATGCGTGGAAAGATGCTTTGAGCCAATTAGAAAAGGTAGACAATGAAGCCTTAGAAGGGATAACTTACTCAGCTTTGGAGTTCAGTTACAAAAGGCTGAAAGGCAGTGAAATAAAAGCTTTTTTCTTGCTCTGTGCAACTAAAGGTAAAAATTCTTGCATCAGTGACCTATTCAAATATGGAATGGGTCTAGGTATGTTCAACAACACAAATACAATGACAGGTGCGAGAAACAGACTTCAAAACATGATAAGTGCATTAAAAGCATCTTGTTTGTTGGAAGATGACACAAGCACAACAAGAATCAAAATGCATGATGTTGTTCGAGAAGTAGCTATCTCCATAGCTTATAGGGATTATCACATATTATGTAAGTATGGAGATGAGTTAAAGGAATTCCCACCAACAAATATTCTTAGCAAGTGCTCCCAGATCATTTTGCGCAATGGTGATTTTCTCCATCTTCCTGAAAAGTTAGATAGTCATAATCTAAAATTGTTCTGCTTGTATCAATATGATCTATCTCTAGAAATCCCTAATTCCTTTTTTGCGGGGACAAAAATCCTTGAAGTTTTAGATTTAACAGGCTTGAACTTGGCTTCATTGCCCACTTCTTTTCATTCCCTAACAAATCTTAAAACTTTGTGTCTGGACCAATGTATTCTCGATAATATCGATGCAGTGGGAGCTTTGAAAAATTTAGAAATACTTAGTCTCCTATACTCATCCATGATAAAACTTTCAAGTGAAATAAGGAAATTGACTCAATTAAGAATGCTCGATTTGAGTCATTCTGGGATTGAAAGCATCCCCCCAGGCATCATATCAAGTTTGACCAAATTGGAGGAGTTGTACATGGGTGATACCTCCATTAAGTGGTCGGTTGAGAATTCAGACAATCAAGATGAAAATGCCAGCCTCGATGAACTTCGGCAATTGTCGAACCTAGCAGCTCTAGAATTACAAATACAAGAGGCATGGATGTTGCCAAGAGACTTGATGTTTGATAAACTAGAAATGTTCAAAATTGTCATCGGAGACATCTGGGAATGGGCTGATATTGACGATGTCACATTGAAAACGTTGAAGCTCAAGCTTGGCACCAATATTCACTTGGAGCATGGGATCAAAGCGTTGATTAGAAGAGCTGAGAATTTGTATTTGGATCAAGTTGAAGGCATTTGGAACATACTCTATCAATTGAATGGGGATGGATTTCCTCAACTAAAGCAACTCCACATCCAGAATAATGCCATAATTAAGCACATCATTGATTTCACAGAGAGGACTCATGTTCCAACCCCATTTCCAAACCTTGAAAAACTGGTGATTCAGAATCTGAGTAAGATGGAGATAATTTATCGTGGGCCACTTTCAATTGATTCCTTTGCCAAGCTCAAAGCCATCAAAGTTGAAAATTGTAATAAAGTGAAATATCTTCTCTCTGTTTCGATGATTAAAAGCATGTCTCATCTTTCAGAGCTCCAAGTTTCTCAATGCAATCTTATGGAAAAAGTGGTGTTTGAAGATGGTGTTGAGAGTGCAATGAATGATGAAACTGATGAAAGCATTAAGTTTCCATGGCTCCATTCTCTGACTTTACAACATTTGGATGCACTTGAAAGTTTCTTTTCTGATGAGGCAACATCTTCAACTCCTGTATCCCTTTTTAACAATCAAGTTGCGTTTCCTAATTTGGACACACTCAAGTTAAGCTTGGTCAATTTGAACAGAATTTGGAAGGATAATCTACACTCTTTTAACAAATTGACAAATTTGATTGTTGAGAATTGTGATGGTCTAAAATATTTGTTCTCATCTACTATGGTGAAGAGTTTTCCCAACCTCGCAAAGCTTGAAATAAGTAAGTGCCATCAAATGGGGGAGATAATAGCAGAAGATACGGACAACAATAATGTCACACATGAAGAGGTTCGATTCTCCAAATTGCAAACAATTATCTTGAAGGAAATGAAGAGCTTGAAGAAAATATGGCACAAAGAATTTTCTAAAGTGAAGACATTAGAAATAAGAAATTGTGAGAAAATTAGAGTAATTATTCCTTCTTCGATGCAAAAAGCATATAATGATCTAGAAACATTAATGGTTGCTGATTGTGTTTCGGTGGAAGAGATATTTCAACTCTGTTCTGATGAAAATTCCATTTCGCTGGAACAAACACAGCTGAAAACAATCACTCTAGAAAGATTACCAAAGCTAAAACAAATATGGAGCAGGGATCCTCACGGAGCTCTTAGTTTTTGCAATGTACAAGAAATATATATCCAGATCTGCCAGAGCTTGGAATTTGTATTTCCATATTCAGTAGCCACAAGTTGCTCACTTCTTAAAGTACTTGAAGTTAAAAACTGTTATAACATGAAGGAAATTGTTTCATTGAAGGAAGAGCCCGCGTTCTCATCTATTTCCTTCGAGTTTAACCATTTAAGTACTTTGTTGCTTTGGAACCTAGTTAAACTCAAAGGGTTCTATGCAGGAAATCACACATTATCATCTCCATCTTTGAGAAAGTTAGATGTCTCAGGATGTGTGAAATTGAATTTGTACAGAACTCGTTCAACAAGTAGCTACCCGAAGCTTCCAGATGAAGAAAATATTGGTTCATCAAAGCAACATTTGGTAACTGAACAGGTAATACCTAATTTGGAGCACTTGAGAATAGATGAAAAAGACGCCATCAACGTATTACGACTCCAAAATATAGGTTTCCTCTTCAGCAGAATATCATTTCTTGGTCTATCCAACTATGAGGCAGAAGGTTCTACGTTTCCAGATCAGGTTCTGCAAAGTATTTGTAGTTTGAAGCACTTACTCATTGAGTGGAGTTCCTTTAAGAAGATATTTCAAGATCAAAGACTTTCAAATGACAAAAATTGTACAAAGCTCCAAAAGTTAACACTGTTTCAGTTACCAAATCTTCAACATATATGTGAAGAAGGATTCCAAATTGACCCAGTTCTTGAACTTCTTGAATATTTAGATGTTGATAGATGTTCGAGTTTGATAAACCTGGTTCCTTCCTCTGTTACCTTTTGCTATTTGACCAATCTTGAGGTAGCAAATTGCAATGGGATGGTAAACTTACTTTCTCCTCAAACAGCAAGAAGTCTGGCCAAGCTCAATGTAATGAAAATAAAAGAATGTGAATCACTTGAGGAAATAATATCAAAGGAGGGAGAAGAGATAACAAATGAGATTGATGTGGTTGTTAGGGAATGCGCTCGCATGAAGTATTTCTCTGAGGGAGATAGCATAAGTACTCCAAAGCTTCGAAAAGTGAAAATAACAGAGAACAACAGTAAAGAATTTTATTGGAAGGGAGATTTGAATGGCACCATAAAATACATCTTTGAAGATAAGGAAGTCTCACACTCTAATGAGAATTAA 4482 0.3764 MEVLMSLAAKVAEYTVAPIGRQFSYLIFYKANFKELSELVTDLEGKRDEIKHRVQNERRNGKTIETRVQNWLNKVDEAIQEANQLQNDARREKAGCSRWSFPNVVTRHQLSRKATKVTKNVVEAQGGGNFDRVAYLPELDVGSTSAISHSKGFESRKSIQENILHALRDTKVSMVGVYGLGGVGKTTLVEEVAQIAKKDRVFDSVVMATISKTPNIKTIQEEIADKLGLHFEELTVAGRAPRLCERIKMEKTILLILDDIWEALDLKNVGIPSEGEHSGCKILMTSRNSDLLRLMGVKENFKLHVLNDEESWSLFKSKADNLDKEPDKHQVALQLAKKCAGLPILIVTTARSLMDQNIHAWKDALSQLEKVDNEALEGITYSALEFSYKRLKGSEIKAFFLLCATKGKNSCISDLFKYGMGLGMFNNTNTMTGARNRLQNMISALKASCLLEDDTSTTRIKMHDVVREVAISIAYRDYHILCKYGDELKEFPPTNILSKCSQIILRNGDFLHLPEKLDSHNLKLFCLYQYDLSLEIPNSFFAGTKILEVLDLTGLNLASLPTSFHSLTNLKTLCLDQCILDNIDAVGALKNLEILSLLYSSMIKLSSEIRKLTQLRMLDLSHSGIESIPPGIISSLTKLEELYMGDTSIKWSVENSDNQDENASLDELRQLSNLAALELQIQEAWMLPRDLMFDKLEMFKIVIGDIWEWADIDDVTLKTLKLKLGTNIHLEHGIKALIRRAENLYLDQVEGIWNILYQLNGDGFPQLKQLHIQNNAIIKHIIDFTERTHVPTPFPNLEKLVIQNLSKMEIIYRGPLSIDSFAKLKAIKVENCNKVKYLLSVSMIKSMSHLSELQVSQCNLMEKVVFEDGVESAMNDETDESIKFPWLHSLTLQHLDALESFFSDEATSSTPVSLFNNQVAFPNLDTLKLSLVNLNRIWKDNLHSFNKLTNLIVENCDGLKYLFSSTMVKSFPNLAKLEISKCHQMGEIIAEDTDNNNVTHEEVRFSKLQTIILKEMKSLKKIWHKEFSKVKTLEIRNCEKIRVIIPSSMQKAYNDLETLMVADCVSVEEIFQLCSDENSISLEQTQLKTITLERLPKLKQIWSRDPHGALSFCNVQEIYIQICQSLEFVFPYSVATSCSLLKVLEVKNCYNMKEIVSLKEEPAFSSISFEFNHLSTLLLWNLVKLKGFYAGNHTLSSPSLRKLDVSGCVKLNLYRTRSTSSYPKLPDEENIGSSKQHLVTEQVIPNLEHLRIDEKDAINVLRLQNIGFLFSRISFLGLSNYEAEGSTFPDQVLQSICSLKHLLIEWSSFKKIFQDQRLSNDKNCTKLQKLTLFQLPNLQHICEEGFQIDPVLELLEYLDVDRCSSLINLVPSSVTFCYLTNLEVANCNGMVNLLSPQTARSLAKLNVMKIKECESLEEIISKEGEEITNEIDVVVRECARMKYFSEGDSISTPKLRKVKITENNSKEFYWKGDLNGTIKYIFEDKEVSHSNEN 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242377g00002 1493 SMART AAA_5 171 309 IPR003593 GO:0016887
Stsc242377g00002 1493 Gene3D Ribonuclease Inhibitor 997 1150 IPR032675 -
Stsc242377g00002 1493 Coils Coil 68 95 - -
Stsc242377g00002 1493 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1055 1211 - -
Stsc242377g00002 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 403 IPR027417 -
Stsc242377g00002 1493 PRINTS Disease resistance protein signature 174 189 - -
Stsc242377g00002 1493 PRINTS Disease resistance protein signature 247 261 - -
Stsc242377g00002 1493 PRINTS Disease resistance protein signature 339 353 - -
Stsc242377g00002 1493 PRINTS Disease resistance protein signature 610 626 - -
Stsc242377g00002 1493 Gene3D Ribonuclease Inhibitor 452 700 IPR032675 -
Stsc242377g00002 1493 Gene3D - 142 303 IPR027417 -
Stsc242377g00002 1493 Gene3D Ribonuclease Inhibitor 1165 1441 IPR032675 -
Stsc242377g00002 1493 SUPERFAMILY L domain-like 450 1068 - -
Stsc242377g00002 1493 SUPERFAMILY RNI-like 1095 1420 - -
Stsc242377g00002 1493 FunFam Probable disease resistance protein At1g61300 145 300 - -
Stsc242377g00002 1493 Pfam NB-ARC domain 163 388 IPR002182 GO:0043531
Stsc242377g00002 1493 Gene3D Ribonuclease Inhibitor 713 996 IPR032675 -
Stsc242377g00002 1493 Gene3D - 305 392 IPR042197 -
Stsc242377g00002 1493 SUPERFAMILY RNI-like 765 999 - -
Stsc242377g00002 1493 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242377g00002 Stsc-Chr242377 10997 22600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242377g00002 172 632 WRKY Transcription Factor Family AT5G45050 23.729 4.08e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242377g00002 - - aip:107625541 2235.3