Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242375g00003 ATGGAGATTCAGCAAACCCTAAAGTTCATTGTCCACCACCACAACAGAAGAAGAAAAGAAAGCAACAACACACCAAAGCTGAAATGGAGGAACATCTTCTCATCACTCAAAAAATCACCGCCGTCATCAAAACCCACAGAAACTCCACCGCCGCCGGAAGAGTTCATCTGCCCAATCTCCGGCACCCTAATGGCTGACCCTGTGATCGTATCATCCGGTCACTCCTTCGAACGAGCCTCCGTACAATCATGCAAAGATCTCAACTTTACCCCTCAACTCTCCGATGGAACCACCCCTGATTTCTCCACCGTGATCCCCAACCTCGCCCTCAAATCCGCCATCTCCAAATGGTGCCACGCCTCATCCACCCTCCCCCCTCAATCCCCAAACCAGTCCCTCACCGATAACCTCGTACGGACACTCATCTTCTCTTCATCTTCTTCCCGCGAAAACAACGCAGTGGGAGAGAGAGACACAACGCTAACAACGAACCCTTCTTGTTCTTCTTCTTCTTCCTCCTCCGTTGAGTCCATTGCCACGTCAGCATCGAGCTCCACCCCACCCGCTCAACTCACCGCGAAACCAAGCTTCTGCTACTCTTCACCTTCTTCCTCCGAACTCGAACCAATAACCCCGGAAGCCGAAGAATTCATCTCGAAGCTTCGGAGCAATCAGGTCTTCGTAATCGAAGAATCTCTGCAGAATCTGAGGAAGCTCACGAGGACTAATCAAGACTCAAGGATCACAGTCTGCACACAACGAATGCTTTCATCTTTGCGTGGCCTCGTTGCTTCCAAGTATAAAATGGTTCAGGTGAACGCAGTAGCGTGCGTCGTGAACCTCTCTCTGGAGAAACCGAACAAGGTGAGGATCGTACGGTCAGGGTTAGTTCCGCCATTGATAGAAGCTTTGAGGGTGGGATCCCCTGAGGCGCAGGAACACGCTTCCGGTGCGCTCTTCAGTTTGGCGCTTGAGGACGATAATAAAACCGCGATTGGGGTTCTCGGAGCTCTTCCACCGCTGATTCACGCGCTTCGAGTTGGAACTGAGCGGACTCGGCATGACTCGGCCTTGGCGCTTTACCATTTGTCGATGGTTCAGAGTAACAGAACCAAATTGGTTAAGATTGGGTCGGTTCCGGTTTTAATTGGGATGGTCAAGTCGGGTCAGATGACGGGTCGAGTTTTGATGATTTTGGGTAATTTGGGATGCGGGCCAGATGGACGGTCTGCAATGTTGGATGCGGGTATGGTTGAGTGTTTGGTCGGGTTGTTGGCTGGGTCCGGGTCGGTTCATGGATCAACACAGGAGAGCTGTGTGGCGGTGCTATACGTGTTGAGTCACGGAGGGTTGAGGTTTAAGGCCGTGGCGAAGGCGGCAGGAGTGGTGGAGGCGCTCGAGAAGGCAGAGAAGGGGTTGGGGAATCAGCGGGCGAAGGAGAAGGCGCGGAGAGTTTTAGAGATCATGAAGGGCAAAGAAGACGAAGAGGAGGAGGAAGTCGATTGGGAGGAGCTGCTTGACTCCGGTCTAAGTAGCCGGAGTCATGACCAACAGCAGGATGGTGAGTTGGCGGGTTAA 1578 0.5266 MEIQQTLKFIVHHHNRRRKESNNTPKLKWRNIFSSLKKSPPSSKPTETPPPPEEFICPISGTLMADPVIVSSGHSFERASVQSCKDLNFTPQLSDGTTPDFSTVIPNLALKSAISKWCHASSTLPPQSPNQSLTDNLVRTLIFSSSSSRENNAVGERDTTLTTNPSCSSSSSSSVESIATSASSSTPPAQLTAKPSFCYSSPSSSELEPITPEAEEFISKLRSNQVFVIEESLQNLRKLTRTNQDSRITVCTQRMLSSLRGLVASKYKMVQVNAVACVVNLSLEKPNKVRIVRSGLVPPLIEALRVGSPEAQEHASGALFSLALEDDNKTAIGVLGALPPLIHALRVGTERTRHDSALALYHLSMVQSNRTKLVKIGSVPVLIGMVKSGQMTGRVLMILGNLGCGPDGRSAMLDAGMVECLVGLLAGSGSVHGSTQESCVAVLYVLSHGGLRFKAVAKAAGVVEALEKAEKGLGNQRAKEKARRVLEIMKGKEDEEEEEVDWEELLDSGLSSRSHDQQQDGELAG 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242375g00003 525 Pfam Armadillo/beta-catenin-like repeat 286 323 IPR000225 GO:0005515
Stsc242375g00003 525 SUPERFAMILY ARM repeat 215 487 IPR016024 -
Stsc242375g00003 525 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 332 IPR000225 GO:0005515
Stsc242375g00003 525 MobiDBLite consensus disorder prediction 148 173 - -
Stsc242375g00003 525 PANTHER U BOX DOMAIN-CONTAINING 32 494 - -
Stsc242375g00003 525 Pfam U-box domain 52 120 IPR003613 GO:0004842|GO:0016567
Stsc242375g00003 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 128 IPR013083 -
Stsc242375g00003 525 SUPERFAMILY RING/U-box 45 122 - -
Stsc242375g00003 525 ProSiteProfiles U-box domain profile. 50 124 IPR003613 GO:0004842|GO:0016567
Stsc242375g00003 525 Coils Coil 475 499 - -
Stsc242375g00003 525 Gene3D - 211 488 IPR011989 -
Stsc242375g00003 525 MobiDBLite consensus disorder prediction 489 525 - -
Stsc242375g00003 525 SMART arm_5 243 283 IPR000225 GO:0005515
Stsc242375g00003 525 SMART arm_5 405 448 IPR000225 GO:0005515
Stsc242375g00003 525 SMART arm_5 284 324 IPR000225 GO:0005515
Stsc242375g00003 525 SMART arm_5 325 365 IPR000225 GO:0005515
Stsc242375g00003 525 FunFam RING-type E3 ubiquitin transferase 212 489 - -
Stsc242375g00003 525 SMART Ubox_2 54 117 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242375g00003 Stsc-Chr242375 20549 22126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242375g00003 1 515 U-box Gene Family AT5G40140 52.670 7.70e-169 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242375g00003 - - lja:Lj2g3v1020040.1 588.956