Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242374g00005 ATGAGCCCAGCTGGTAGAGTAAAATTAAGCTCATGGTTCATGCAGTTTGAGTACTCAACTTTAGAGAGAGCGACCAATGTTTTCAACGAATTCCATAAACTTGGTGAAGGGGGATATGGTGAAGTTTACAAGGGAACCTTACAAGATGGTAGAGAAATAGCGATAAAGCGTTTCTTTTTAAGTGGGAAGCAGGGGAAAGAGGAAGTTTACAATGAAATTGATGTTAGAGATGGGGTGGTAGTGGCGGTGGTGGTTGCTAGGATGAGAGTTGGACAAGAAAGGATTTGGGTGGTGGAAGATCCGGAGAAGAAGAAAGAGTTGGATTGGCCAAAGAGGCATGGTATAATCCTTGGGATAGCTGATGGATTGGAACATCTTCATAACAATTCCGAAGGACCAATAATTCATAGAGACATTAAAGCCGGAAACATTCTATTAGACTTGAAATATAGACCAAAGATCTCTGATTTTGGTTTAGCAAAGTTGAAGTCCTATGAATGTGCATCTATTGTAGGCACATTGGGGTACATGGCACCAGAATATCTGGCTGGTTGTGCCATAACAGAGAAAGTAGACATTTACAGCTTTGGAATATTAGTTCTTGAAATCATAAGTGGAGTGGAGAATGGAAAATTTGAGTCTATTGAAGAAACATTTGAGACTCTTGTTTCTCATGTATGGAAGCATTTCAAATCAAACACAACATCAAAACTTATTGATGAAAGTATGGAAAATCAAGATGTTGAAGAAATTGAAAGAATTATCCAGGTGGGACTTTTGTGCACACAAGAGTTGCCATATCTACGTCCCTGCATGACAGAGGTTGTTGCAATGCTTAGACAGAAAGATCTTGTGATGCCATCACCTTCCAAACCTCCATTCATTGTTGATTCTTATGAATTGCCACAAGAAGTAGAATTTAGTTGGCAATCGAAATGTTCAGATGTATCAGAATCATCTATGCCTTTAAACTTTGGAGAAAAAAGTGTGTAA 993 0.3877 MSPAGRVKLSSWFMQFEYSTLERATNVFNEFHKLGEGGYGEVYKGTLQDGREIAIKRFFLSGKQGKEEVYNEIDVRDGVVVAVVVARMRVGQERIWVVEDPEKKKELDWPKRHGIILGIADGLEHLHNNSEGPIIHRDIKAGNILLDLKYRPKISDFGLAKLKSYECASIVGTLGYMAPEYLAGCAITEKVDIYSFGILVLEIISGVENGKFESIEETFETLVSHVWKHFKSNTTSKLIDESMENQDVEEIERIIQVGLLCTQELPYLRPCMTEVVAMLRQKDLVMPSPSKPPFIVDSYELPQEVEFSWQSKCSDVSESSMPLNFGEKSV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242374g00005 330 SMART serkin_6 28 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242374g00005 330 ProSitePatterns Protein kinases ATP-binding region signature. 34 56 IPR017441 GO:0005524
Stsc242374g00005 330 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 89 287 - -
Stsc242374g00005 330 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 75 - -
Stsc242374g00005 330 Pfam Protein kinase domain 28 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242374g00005 330 ProSiteProfiles Protein kinase domain profile. 28 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242374g00005 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Stsc242374g00005 330 Gene3D Transferase(Phosphotransferase) domain 1 91 287 - -
Stsc242374g00005 330 SUPERFAMILY Protein kinase-like (PK-like) 9 281 IPR011009 -
Stsc242374g00005 330 Gene3D Phosphorylase Kinase; domain 1 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242374g00005 Stsc-Chr242374 25453 27790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242374g00005 11 298 Receptor kinase-like Gene Family AT4G28670 52.548 1.18e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc242374g00005 Pkinase 1.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242374g00005 - - ahf:112697305 539.65