Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242373g00002 ATGAAAGTGCCCTTCTCCTCCTCTTCTGCATTTCAAATTCACAAACAAACATCCTCTTCATATTCAATGACCCGCCTTCTTCTGTTTCTTCATGCTGCTCTTGCTCACACTTATGCAAATGCACAACCTCCAGGAGTTGACGTTACAATAGTGCACCACCACCATTTGAATAAGCGGGCTCAAATGTCATTAATTCTTTCTTCTGCGCTTCTCCTTGGAATCTTCCTACTTGTATTGTATGTCTGCTTTCGTCGCCATAGAAGCTTAACAAGCTCCAGCAGTAAAAGCCAAGGAAACACGGAGGCTGCAAAGGGGGACACCTTAAACCCTCTCAATGCTAAACTTAACTACTCAAGGATGGCAGATAACAAGAGTTCAGTTGCTATTTTTGACTTTCACTTGTTAGAGGCTGCAACAAACAGCTTTAGCCAAAGTAACGTTATGGCTGAGAGTGGTTCCAGAATTGTTTACAGAGCTCGTCTTGATGAGAATTTCCATGCTGCTGTCAAGAAAGCAGACAGTGATGCTGACAGAGAATTTGAGAATGAAGTGAGTTGGCTGAGCAAGATTCGGCATCAGAATATCATCAAACTCATTGGCTATTGTATTCATGGCGAATCAAGATTTCTAGTTTATGAATTGATGGAGAATGGATCATTGGAAACTCAATTGCATGGGCCTTGTCGCGCATCGTCTTTAACTTGGTATCTCCGTTTAAGAATTGCAGTTGATGTTGCCAGAGCATTAGAATATCTTCATGAACACTCCAATCCCCCTGTGGTTCATAGAGATATAAAGTCTTCCAATGTTCTTCTGGATTCTAACTTTAATGCTAAGCTATCAGATTTTGGACTTGCTATCTCTTCTGGAATGCAACACAAGAACATGAAGATGTCGGGAACTTTGGGATATGTGGCACCGGAGTACATATCACATGGTAAACTAACTGATAAGAGCGATGTGTATGCTTTTGGGGTTGTCCTTTTAGAACTTCTAACTGGAAAAAAACCGATGGAGAACATGTCCTCGGAGCAATACCAATCCCTGGTTTCATGGGCCATGCCTCAGCTAACTGACAGATTGAAGCTTCCAAGCATTGTAGATCCTGTTATCAGAGACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTAGCTGTTCTGTGTGTGCAAGCAGAGCCAAGTTATAGGCCGCTAATAACAGATGTGCTGCATTCCCTCATCCCTTTGGTGGTACAGAACCAAGCTAAGATACTTGTTAAGCTTGGTGAGAACAACAAGAATGGAGTCCATACAATTTCTAGAGATTCACGACTCTCAATGCTTGCAAATGGAGTTGTTTGTGTTAAGTTGATGTTCTTGGAATCATCGGTTCCGATCCAGCGTGGTTATAACAGCTTGTTTCCACTGAAACACCTCCCCCAGGCCCCAACCCACTCTGTGCTCCCAAAATACGGCAAAACCATGCCAGTTTCATGCTGGAATTGTACTAATAATTCAAAGACCAAGCTTCTTCGGATTGTACATCCTGGCGGTCACACAGAGCTTCACGACAGACCTGTCACCGCAGCCGAGATTATGAGCCGCAACCCAAGATGCTGCATTGCATATCCATATGTGTTTCAGCAACCATGGGCAATTGTTGCACCGGATACAGTGCTCGTGCTTGGACACAAGTACTATGTGGTACCGATGAGCACAATAAGAAAACTGCAAAGGCTTTCTCCAAGGCATTCTCCTTCTCCGGCTCGTGACATAAGCATCAGTTCCTCTGCTGAAGAAACTAGAAATAAACAATTCAGCACAGACGAGGAAGACGAAGGTATGATCCATATGTGCTGCATCTTCAGGAATAATTCAGTTAAACAATATTCACGAAAGAAAGCACAGATGGGATCAGGTGTAAGGTATTCCAATCCAGATGTATGGTGTGACAAATCGCTAAGCAGAAGAAGGATGCAAGATTCAACAGGAAATGAGTGTAGGGGATCTCCAAAGAAAGGATGGTCTTGTGAGATTTGGCAACCAAGTCTAGAGAGCATCATGGAAGAATGA 2058 0.431 MKVPFSSSSAFQIHKQTSSSYSMTRLLLFLHAALAHTYANAQPPGVDVTIVHHHHLNKRAQMSLILSSALLLGIFLLVLYVCFRRHRSLTSSSSKSQGNTEAAKGDTLNPLNAKLNYSRMADNKSSVAIFDFHLLEAATNSFSQSNVMAESGSRIVYRARLDENFHAAVKKADSDADREFENEVSWLSKIRHQNIIKLIGYCIHGESRFLVYELMENGSLETQLHGPCRASSLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDIKSSNVLLDSNFNAKLSDFGLAISSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGKKPMENMSSEQYQSLVSWAMPQLTDRLKLPSIVDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVVQNQAKILVKLGENNKNGVHTISRDSRLSMLANGVVCVKLMFLESSVPIQRGYNSLFPLKHLPQAPTHSVLPKYGKTMPVSCWNCTNNSKTKLLRIVHPGGHTELHDRPVTAAEIMSRNPRCCIAYPYVFQQPWAIVAPDTVLVLGHKYYVVPMSTIRKLQRLSPRHSPSPARDISISSSAEETRNKQFSTDEEDEGMIHMCCIFRNNSVKQYSRKKAQMGSGVRYSNPDVWCDKSLSRRRMQDSTGNECRGSPKKGWSCEIWQPSLESIMEE 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242373g00002 685 Gene3D Phosphorylase Kinase; domain 1 107 214 - -
Stsc242373g00002 685 Pfam PADRE domain 493 684 IPR025322 -
Stsc242373g00002 685 ProSiteProfiles Protein kinase domain profile. 142 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242373g00002 685 SUPERFAMILY Protein kinase-like (PK-like) 118 408 IPR011009 -
Stsc242373g00002 685 Pfam Protein tyrosine and serine/threonine kinase 160 352 IPR001245 GO:0004672|GO:0006468
Stsc242373g00002 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Stsc242373g00002 685 CDD STKc_IRAK 148 411 - -
Stsc242373g00002 685 FunFam probable receptor-like protein kinase At1g80640 215 413 - -
Stsc242373g00002 685 SMART serkin_6 142 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242373g00002 685 Gene3D Transferase(Phosphotransferase) domain 1 215 430 - -
Stsc242373g00002 685 PANTHER OS01G0750732 PROTEIN 40 423 - -
Stsc242373g00002 685 MobiDBLite consensus disorder prediction 573 605 - -
Stsc242373g00002 685 MobiDBLite consensus disorder prediction 583 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242373g00002 Stsc-Chr242373 4654 8548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242373g00002 40 354 Receptor kinase-like Gene Family AT1G80640 47.812 1.19e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Stsc242373g00002 DUF4228 8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242373g00002 - - gmx:100811491 589.341