Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242372g00003 ATGGAAAGAACACAAGATTACTTGAGGTATTGCCTTCAAATAGCACAAGAGAATGGAATATTGGAACTTATTGTTCCACAATCTCCTCAACTTTTAACCTCATCCTCTATTATTGGAAGCCCTCAAGTTCGAATCCCCAATACTACTGCTCCTATTCCTACTCCTTCCCATAACCACCAACCTCATCTTGCAAGGATCATCCATCAAGCCAAAATCAATGGATGGTACATTGATCCTATCGAGATTCAATTGCAAGAAAAAATTGGGGAAGGAAGCACAGCAAACATTTACATGGCAACATGGCGCGGATTCCAAGTAGCAGTGAAGTGCTTATCAGAAGAGTTCTTCAACACAAACCAAAACGCCGTCGTTTTTTTCGCTCAAGAGCTTGAAACCCTCTCCAAACAACGCCATAGATTCGTTCTTCAACTAATGGGCGCGTGCTTGGACCCTCCCGAGCGCGCGTGGATCGTAACCGAGTACTTAACTACGAATCTAAAAGAGTATTTGCATGGCCCTGGCAATAGAAGAAGCAAAGAGAGAGTGGTACCACTCACACCCTTTAGAGAGAGGGTTGTGATGGCATTGGAGATAGCACAAGCCATGCAATATTTGCATGAACAAAACCCTAAGGTTATACATCGCGATCTGAAACCTAGTAATATTTTTTTAGATGATGTGTTGCATGTTAGGGTTGCGGATTTCGGACATGCTCGATTCTTAGATGATGACCAGATGGCTCTTACCGGAGAAACAGGAACATATGTGTATATGGCACCTGAGGTGATCCGATGTGAGCCTTACAATGAAAAATGTGATGTATACAGTTTTGGAGTTATGTTAAATGAGCTTATAACTGGGAAACATCCATACATCGAGACAGAATATGGTCCTACCAAGATTGCAATGGAAGTTGTGGAGGGTAAGTTGAGGCCAACGCTTCCATCTCATGATGCTAATTTAATGGAAGATCTAATTGACCTTATTAACCTTTGTTGGGATGGAGACCCATCAAAAAGGCCACCCTTTGCGGCTATCACATGTACTCTTGAAATTTATGTGAAGAAACTCTATCAAAATATAGCAATTGCTTAA 1095 0.4174 MERTQDYLRYCLQIAQENGILELIVPQSPQLLTSSSIIGSPQVRIPNTTAPIPTPSHNHQPHLARIIHQAKINGWYIDPIEIQLQEKIGEGSTANIYMATWRGFQVAVKCLSEEFFNTNQNAVVFFAQELETLSKQRHRFVLQLMGACLDPPERAWIVTEYLTTNLKEYLHGPGNRRSKERVVPLTPFRERVVMALEIAQAMQYLHEQNPKVIHRDLKPSNIFLDDVLHVRVADFGHARFLDDDQMALTGETGTYVYMAPEVIRCEPYNEKCDVYSFGVMLNELITGKHPYIETEYGPTKIAMEVVEGKLRPTLPSHDANLMEDLIDLINLCWDGDPSKRPPFAAITCTLEIYVKKLYQNIAIA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242372g00003 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Stsc242372g00003 364 SMART serkin_6 82 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242372g00003 364 Pfam Protein tyrosine and serine/threonine kinase 82 348 IPR001245 GO:0004672|GO:0006468
Stsc242372g00003 364 Gene3D Transferase(Phosphotransferase) domain 1 184 362 - -
Stsc242372g00003 364 CDD STKc_MAP3K-like 88 347 - -
Stsc242372g00003 364 ProSiteProfiles Protein kinase domain profile. 82 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242372g00003 364 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 73 347 - -
Stsc242372g00003 364 Gene3D Phosphorylase Kinase; domain 1 70 163 - -
Stsc242372g00003 364 ProSitePatterns Protein kinases ATP-binding region signature. 88 109 IPR017441 GO:0005524
Stsc242372g00003 364 SUPERFAMILY Protein kinase-like (PK-like) 58 350 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242372g00003 Stsc-Chr242372 17805 20945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242372g00003 81 356 MAP Kinase Kinase Kinase AT5G03730 37.545 3.14e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Stsc242372g00003 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242372g00003 - - ahf:112757851 573.933