Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc242366g00003 | ATGGGTTCAATTGGAACAGAAAGCCCAAAGGTTGAGGTTGCAACCATTGATGTAACTGCAACTAAGGGTCTTATTCAGAATGGCCATGTTTATCTAGATGTTAGGACTGTGGAAGAGTTTGAGAAAGGGCATGTGGATGCAGAGAAAATTATCAATATTCCATACATGTTTAATACACCACAGGGAAGGGTGAAGAACCAGGAGTTTCTGAAGGAGGTTTCATCTGCTTGTAAGAAAGAAGATCACATCATTGTGGGTTGCCAGAGTGGGGTGAGGTCTCTTTATGCAACTGCTGATCTTCTTGTTCAGGGTTATAAGGATGTGAATAACATGGGAGGAGGCTATTTGGATTGGATCAAGAATGAATTTCCAGTAAAAGCACCACCAAAAGTGAAAAATGATCTCTAA | 408 | 0.4069 | MGSIGTESPKVEVATIDVTATKGLIQNGHVYLDVRTVEEFEKGHVDAEKIINIPYMFNTPQGRVKNQEFLKEVSSACKKEDHIIVGCQSGVRSLYATADLLVQGYKDVNNMGGGYLDWIKNEFPVKAPPKVKNDL | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc242366g00003 | 135 | CDD | RHOD | 19 | 118 | - | - | |
| Stsc242366g00003 | 135 | SUPERFAMILY | Rhodanese/Cell cycle control phosphatase | 13 | 125 | IPR036873 | - | |
| Stsc242366g00003 | 135 | SMART | rhod_4 | 16 | 124 | IPR001763 | - | |
| Stsc242366g00003 | 135 | Gene3D | - | 5 | 127 | IPR036873 | - | |
| Stsc242366g00003 | 135 | ProSiteProfiles | Rhodanese domain profile. | 25 | 127 | IPR001763 | - | |
| Stsc242366g00003 | 135 | Pfam | Rhodanese-like domain | 25 | 120 | IPR001763 | - | |
| Stsc242366g00003 | 135 | PANTHER | THIOSULFATE SULFURTRANSFERASE 18 | 6 | 133 | IPR044684 | GO:0003824 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc242366g00003 | Stsc-Chr242366 | 17536 | 19377 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc242366g00003 | 3 | 125 | Sulfurtransferasese or Rhodanese | AT5G66170 | 58.537 | 3.86e-53 | 162 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc242366g00003 | - | K15692 | gmx:100792251 | 227.639 |