Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242365g00001 ATGAATAAAGATTTGGTTTCTCAGGGTTGCGATGCCTCCATATTAATAGACTCAACAGAGGACAACCAATCTGAGAAAGATGCAGATGCAAACGAAACCGTCAGGGGTTTCGAGATCATCGACAATGCCAAGAAGAAGTTAGAAAAAGCATGCCCTTCAACAGTTTCATGTGCAGACATCATAGCCCTAGCTGCAAGAGACGCCGTCGCCATAACCGGAGGACCATGGTACGCCGTTCCCACCGGCCGCCGCGACGGCTTCGAATCAAACCCTTCCGACGCAGATACCCTGCCAGGACCAAGCTCAACAGTGTCACACGCCCTTCAAATCTTCACATCAAAGGGCATGACACTTAGCGAAACGGTAGCCCTAATGGGAGCACACACCATTGGTTCTGCTCATTGTGATTCTTTCAGGAAGCGGCTTCGAGGAAGAGACGCAACAATGGATCCTTCTCTGAATGAGAAGCTTGTGAGGCTTTGTGGGAATAATAATAGTAATGATGATGATGGTACGGCGTTTTTGGATCAGAACACTTCTTTTGTGTTTGACAATGAATTCTATAAGGAGGTTGTTAACAAGAGAGGGGTGCTTTTCATTGATCAGCAGTTGGGTTTGGATGGGTTGAGTAAGGGGTTGGTGTTGAAGTTCGCCGCAGATGGTGAGAGCTTTCGACGAAGCTTTGTGAATGCGATTGTGAAGATGGGAAGTATTGGTGTTTTGGTTGGAGATGATGGGGAGATTAGAACTCATTGCTGGGATTATAATGATAATTATGCATAA 783 0.4623 MNKDLVSQGCDASILIDSTEDNQSEKDADANETVRGFEIIDNAKKKLEKACPSTVSCADIIALAARDAVAITGGPWYAVPTGRRDGFESNPSDADTLPGPSSTVSHALQIFTSKGMTLSETVALMGAHTIGSAHCDSFRKRLRGRDATMDPSLNEKLVRLCGNNNSNDDDGTAFLDQNTSFVFDNEFYKEVVNKRGVLFIDQQLGLDGLSKGLVLKFAADGESFRRSFVNAIVKMGSIGVLVGDDGEIRTHCWDYNDNYA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242365g00001 260 Gene3D - 4 255 - -
Stsc242365g00001 260 ProSiteProfiles Plant heme peroxidase family profile. 1 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 Gene3D Peroxidase, domain 2 98 235 - -
Stsc242365g00001 260 MobiDBLite consensus disorder prediction 82 101 - -
Stsc242365g00001 260 PANTHER - 4 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 ProSitePatterns Peroxidases proximal heme-ligand signature. 120 130 IPR019793 -
Stsc242365g00001 260 PRINTS Plant peroxidase signature 73 88 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 PRINTS Plant peroxidase signature 230 243 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 PRINTS Plant peroxidase signature 54 64 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 PRINTS Plant peroxidase signature 174 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 PRINTS Plant peroxidase signature 190 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 PRINTS Plant peroxidase signature 35 48 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 PRINTS Plant peroxidase signature 119 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 SUPERFAMILY Heme-dependent peroxidases 6 256 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 CDD secretory_peroxidase 8 252 IPR033905 GO:0004601|GO:0042744
Stsc242365g00001 260 FunFam Peroxidase 98 235 - -
Stsc242365g00001 260 PRINTS Haem peroxidase superfamily signature 120 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 PRINTS Haem peroxidase superfamily signature 73 85 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 PRINTS Haem peroxidase superfamily signature 55 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242365g00001 260 Pfam Peroxidase 4 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242365g00001 Stsc-Chr242365 3063 4133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242365g00001 4 257 Peroxidase AT4G26010 50.588 6.44e-86 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242365g00001 K00430 - dcr:108224440 291.582