Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242363g00003 ATGGGAAGGTCCCCATGCTGCGATGAGAATGGCCTAAAGAAAGGACCATGGACACCTGAAGAAGATCAAAAGCTAGTCAATCACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTTCCCAAGTTAGCAGGTCTTAATAGATGCGGGAAAAGCTGTAGGCTAAGGTGGACTAATTATTTAAGGCCAGACATCAAGAGGGGGAAATTCTCTCAAGAAGAGGAGCAAACTATTCTTCATCTACATTCCATTCTTGGAAATAAATGGTCAGCAATTGCAACTCATCTTCCAGGAAGAACAGACAATGAGATAAAGAATTTCTGGAACACTCATTTAAAGAAAAGGCTAATTCAAATGGGTTTTGATCCAATGACCCATCAGCCAAGAACTGATCTTTTTTCAACTTTGCCATATCTACTAGCTTTGGCCAACAACATCACTGATTTCATGGATCATCAATCATTTGATGAACATTCTCTAAGGCTCCAATTAAAAGCACTTCAATTAGCAAAATTTCAACAACTTAATTACTTACTTCAATCCTCCACCACCACCACTACTACTACTAATAGTTCCTTAAGTAACATTATTAGTACCAACAACTCCTATGACCAAAATAATAATGCCATCACAAATATGGAAGCTTTCAATTTGTTAAATTCAATCCCTAATAATGATAATAATGTCAAAGAAAATAATAACCTAGTTACTTCAGATTCTAGTAATAATTTTCCCCCAGAATTATTGGATAATAATACCACATTATTTGATTCTTCTTGTTCTTCTCAACCACTACACCACCAAGCAAGCAACATGCTATTACCTCATTTATTAGACCCATCACAGCCACAACTCTCTTTGACAAGTTCCCAATCATGTTTAAATAATGATAATTTGTTGCAAGTTATGGGTGAAGGCGATGATCACATTATTTCTCCATGGAACATCATAAAATCGTTATCGTCCTCGTCTTCCTCGTCATCTCCTAGTTCTTCAAATGTTCCACTACTAAATGCAAGCAGCAGCACTACTTCTAGCTATGCTGGAAGTGGAACCTCCTCTTACTGGCCTGAACTCTTTTTTGAAGATCCCATGATGCATGACGAGTTATAG 1113 0.3747 MGRSPCCDENGLKKGPWTPEEDQKLVNHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKRLIQMGFDPMTHQPRTDLFSTLPYLLALANNITDFMDHQSFDEHSLRLQLKALQLAKFQQLNYLLQSSTTTTTTTNSSLSNIISTNNSYDQNNNAITNMEAFNLLNSIPNNDNNVKENNNLVTSDSSNNFPPELLDNNTTLFDSSCSSQPLHHQASNMLLPHLLDPSQPQLSLTSSQSCLNNDNLLQVMGEGDDHIISPWNIIKSLSSSSSSSSPSSSNVPLLNASSSTTSSYAGSGTSSYWPELFFEDPMMHDEL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242363g00003 370 CDD SANT 69 112 IPR001005 -
Stsc242363g00003 370 CDD SANT 16 61 IPR001005 -
Stsc242363g00003 370 Gene3D - 69 116 - -
Stsc242363g00003 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc242363g00003 370 FunFam Transcription factor MYB39 69 130 - -
Stsc242363g00003 370 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc242363g00003 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc242363g00003 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc242363g00003 370 SMART sant 13 63 IPR001005 -
Stsc242363g00003 370 SMART sant 66 114 IPR001005 -
Stsc242363g00003 370 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc242363g00003 370 Gene3D - 11 67 - -
Stsc242363g00003 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Stsc242363g00003 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc242363g00003 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc242363g00003 370 FunFam MYB-related transcription factor 13 66 - -
Stsc242363g00003 370 MobiDBLite consensus disorder prediction 323 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242363g00003 Stsc-Chr242363 18566 20826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242363g00003 1 366 MYB Transcription Factor Family AT1G34670 50.773 2.06e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc242363g00003 Myb_DNA-binding 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242363g00003 K09422 - gmx:100782792 389.423