Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242359g00002 ATGGTTGGTGGTGGTGGAAACGGAGAGAGACCGCCGTGGAAGGTCGAGAATAGTGGCGGCGTGGAGGAGCAGCCACCACAGAGACCGAGCATCACTCTTCCGTCACGTGGCGGCGGCGGCAGTTCGATGGAAAGTCTGTTTGGCGGCGGTTTCAGCCCTGGTCCGATGACACTAATCACAAGCTTGTTCGGGGGCGACGATGGGAATAAGTCGTTCTCTCAGCTGCTGGCCGGAGCCATGGCATCTCCGACGGCGGCGGTGGGGCCCAGTGGAGTTATTGATTCTGCTTCTGGCTTCTTTTCATCTTCTGAGGTTCCTCTAGGAATGACACATCAACAGGCACTAGCACAGGTCACTACTCAAGGAACACAGCAACCACACTCAACTATGCAAGTCCAACCTCAACATTCATTTCAAACAATGTCTGCTAGTACCTCATTTGCACAAGTTCCTGCTGCAAACACTTCCAACAACAATACTAATCCACACATGGCGGAGCCTTCTTCTTCCTCATTGAATGTCGATAAGCCTGCCGACGACGGATACAATTGGAGGAAGTATGGTCAAAAACAGGTGAAGGGAAGTGAGTTTCCAAGGAGTTACTACAAGTGCACTCATGCAAGCTGTCCTGTGAAGAAGAAAGTTGAGAGGTCACTAGATGGACACATTACTGCAATTATATATAAAGGAGAGCACAATCACCAGCGTCCGACGAATAAGCGTTTGAAAGATTCCGCCATGGCTTCGAGTGAAGGCTCAAACATGCAAGGGAATGCTGATTATCATCATGGCCATGGGACAAGTGCTAATCAATCTAAAATGGATGCAGAATCTAGTCAGGCCACTGGTGAACATCTTTCAGGAACAAGTGATAGTGAGGAAGTTGGTGATCATGAAAATGAGGTGGATGACAAAATTGTTGAGCCTGATCCCAAGAGGAGAAATACAGAGGTGACACGCTCAGATCAAGATTCCTCTCATAAGACAGTCACAGAGCCAAGAATCATTGTGCAAACAACAAGTGAAGTTGATCTCTTAGATGATGGCTATAGATGGCGAAAGTATGGACAAAAAGTTGTCAAAGGCAATCCTCATCCTAGGAGCTATTACAAATGTACAACACCGGGTTGTAATGTTAGGAAGCATGTTGAGAGAGCTTCAACAGATCCTAAAGCTGTTATAACAACATATGAAGGAAAGCATAACCATGATGTGCCAGCTGCAAAGACTAATAGCCACACTATTGCCAACAATAGTTCATCACAATTTAAATCACAAAATAGTAATATACCTCAGATGCATGGTTTTGGAAGCAAAGGTATTGGGATTAATGAGCAACAGCAACAACAATGGCCTGTGGCACGTCTAAGGCTAAAGGAAGAACAGAGAACATAG 1395 0.4609 MVGGGGNGERPPWKVENSGGVEEQPPQRPSITLPSRGGGGSSMESLFGGGFSPGPMTLITSLFGGDDGNKSFSQLLAGAMASPTAAVGPSGVIDSASGFFSSSEVPLGMTHQQALAQVTTQGTQQPHSTMQVQPQHSFQTMSASTSFAQVPAANTSNNNTNPHMAEPSSSSLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHASCPVKKKVERSLDGHITAIIYKGEHNHQRPTNKRLKDSAMASSEGSNMQGNADYHHGHGTSANQSKMDAESSQATGEHLSGTSDSEEVGDHENEVDDKIVEPDPKRRNTEVTRSDQDSSHKTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNSSSQFKSQNSNIPQMHGFGSKGIGINEQQQQQWPVARLRLKEEQRT 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242359g00002 464 Gene3D WRKY domain 167 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 Gene3D WRKY domain 330 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 ProSiteProfiles WRKY domain profile. 341 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 MobiDBLite consensus disorder prediction 152 177 - -
Stsc242359g00002 464 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 111 429 IPR044810 GO:0003700
Stsc242359g00002 464 MobiDBLite consensus disorder prediction 415 434 - -
Stsc242359g00002 464 Pfam WRKY DNA -binding domain 347 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 Pfam WRKY DNA -binding domain 179 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 MobiDBLite consensus disorder prediction 290 329 - -
Stsc242359g00002 464 FunFam WRKY transcription factor 166 238 - -
Stsc242359g00002 464 SUPERFAMILY WRKY DNA-binding domain 338 406 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 MobiDBLite consensus disorder prediction 242 289 - -
Stsc242359g00002 464 MobiDBLite consensus disorder prediction 23 39 - -
Stsc242359g00002 464 FunFam WRKY transcription factor 33 333 399 - -
Stsc242359g00002 464 SMART WRKY_cls 346 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 SMART WRKY_cls 178 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 SUPERFAMILY WRKY DNA-binding domain 176 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 MobiDBLite consensus disorder prediction 1 48 - -
Stsc242359g00002 464 MobiDBLite consensus disorder prediction 228 331 - -
Stsc242359g00002 464 ProSiteProfiles WRKY domain profile. 179 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc242359g00002 464 MobiDBLite consensus disorder prediction 152 176 - -
Stsc242359g00002 464 MobiDBLite consensus disorder prediction 415 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242359g00002 Stsc-Chr242359 8314 14305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242359g00002 9 464 WRKY Transcription Factor Family AT2G03340 47.619 4.24e-140 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc242359g00002 WRKY 9.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242359g00002 - - aip:107643570 827.78