Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242357g00002 ATGTTTCAAGAGACCGCTGCCGTCGCGACTCGGTGGGGGACTGAGGCGGTGGAGGTGCCGATGTCTCACTGGACTCGTGAGGAGGATAAGATGTTCGAGAGAGCCTTGCTTTTCGTGCCGGAGGACCTGCCGGACCGCTGGGACAAGATAGCTGAGCAGGTTCCCGGCAAGTCAGCCGTCGAAGTCAGGGACCGCTACGAGGCCTTGGTACGCGACGTATTTGAAATCGACTCCGGCCGAGTCGAGGTGCCGAGTTACTCGGATGACTCGGCGGGTAGTGGCGGTGGCGGCGGTGGTAGTGGAGGAGGGTTGTCTTCTTGGGACTCAGCCAATCAGATCTCGTTCGGGTCAAAACCTAGGAATAGCGACAACGAGAGGAAGAAAGGCACGCCTTGGACCGAAGAGGAACACAGGTTGTTTTTGATTGGGCTAAGCAAATTTGGGAAGGGAGATTGGAGAAGCATTTCAAGAAATGTGGTTGTTACAAGAACACCTACTCAAGTAGCTAGCCATGCTCAAAAGTACTTTCTCCGTCAGAATTCCGTGAAGAAAGAGAGGAAGAGATCAAGCATCCATGACATAACCACCGTGGATAGTAACTCTGTGCCTGTGCCTATTGATCAGAATTGGGTTCCTCCTCCACAGCAAGAGATGCAGCAACAGCAACAATACTTTAATCCTCACAATCAATTGGGTGGTGGGTTTGGGTATTCAAACTATGGGTTTTGA 729 0.5213 MFQETAAVATRWGTEAVEVPMSHWTREEDKMFERALLFVPEDLPDRWDKIAEQVPGKSAVEVRDRYEALVRDVFEIDSGRVEVPSYSDDSAGSGGGGGGSGGGLSSWDSANQISFGSKPRNSDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPQQEMQQQQQYFNPHNQLGGGFGYSNYGF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242357g00002 242 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 226 IPR043363 -
Stsc242357g00002 242 Pfam Myb-like DNA-binding domain 23 66 IPR001005 -
Stsc242357g00002 242 Pfam Myb-like DNA-binding domain 131 176 IPR001005 -
Stsc242357g00002 242 MobiDBLite consensus disorder prediction 84 131 - -
Stsc242357g00002 242 FunFam transcription factor MYB1R1 130 181 - -
Stsc242357g00002 242 MobiDBLite consensus disorder prediction 104 119 - -
Stsc242357g00002 242 NCBIfam myb-like DNA-binding domain, SHAQKYF class 127 179 IPR006447 GO:0003677
Stsc242357g00002 242 SUPERFAMILY Homeodomain-like 126 181 IPR009057 -
Stsc242357g00002 242 FunFam Transcription factor SRM1 17 83 - -
Stsc242357g00002 242 CDD SANT 131 176 IPR001005 -
Stsc242357g00002 242 ProSiteProfiles SANT domain profile. 127 180 IPR017884 -
Stsc242357g00002 242 SUPERFAMILY Homeodomain-like 23 78 IPR009057 -
Stsc242357g00002 242 CDD SANT 24 70 IPR001005 -
Stsc242357g00002 242 Gene3D - 130 182 - -
Stsc242357g00002 242 ProSiteProfiles Myb-like domain profile. 24 70 IPR001005 -
Stsc242357g00002 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 180 IPR017930 -
Stsc242357g00002 242 ProSiteProfiles Myb-like domain profile. 124 176 IPR001005 -
Stsc242357g00002 242 SMART sant 128 178 IPR001005 -
Stsc242357g00002 242 SMART sant 20 72 IPR001005 -
Stsc242357g00002 242 Gene3D - 21 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242357g00002 Stsc-Chr242357 26850 28611 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc242357g00002 Myb_DNA-binding 4.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242357g00002 - - adu:107467340 425.246