Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242353g00003 ATGGGAAATTGCTTCATAAAACCAGTTGCTAATGTTTCTTCCACCAGCCTTTTTGGAAGTAATATATCTCAATCCAAGCCAAAGCAGGATTCAAGTCCTCCCACGCAAAGATCTTCTTCTCAAAATTCAGTGTCAAATGTTATTGAGAGATCAATTTCCAGCAGCCTTAAGTCCTTCACCTTTAGTGAGCTTAAGGAGGCAACTAAGAACTTCCGGCGAGAAAATTTGATCGGTGAGGGTGGGTTCGGGTTTGTCTACAAAGGGTGGATAGATGAGAACACTCTTGCTCCCACAAAGCCAGGGACTGGGATAGTAGTAGCCATAAAGAAGCTTAAGCCAGAAAGCTTTCAAGGCCACAAAGAATGGCTTGCAGAAGTGAACTATCTAGGGCAGGTTCACCATGAAAATCTCGTAAAACTCATTGGTTATTGCTTGGAAGGGAAGAATAGGCTTCTAGTTTACGAGTTTATGCAGAAAGGAAGTTTGGAAAACCATTTATTCAGAAAAGGTGTTCAACCAATACCATGGATTATGAGGATCAACATCGCGACTGCTGTTGCAAGAGGATTAGCATACTTGCATTCCCTCGATTCGAATATCATTTTTCGCGATTTAAAGGCTTCCAATGTACTACTTGACTCGGATTTCAATGCGAAGATTTCAGATTTTGGCTTGGCAAGAGACGGTCCTACTGGAGATAACACACACGTTTCGACCAGAATTATCGGAACTCATGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGTGTCGTGTTGCTAGAGTTATTAACCGGCCGGCGCGTGGTTGAAGAAGAGAAAGAAGGAGTTCCAGAAGAAACATTGGTGGATTGGGCGAGGCCATTCCTTGGCGATAGCCGAAGGATTTTGAGAATCATGGATACAAAGTTGGGTGGACAGTACTCAAGGAAAGGAGCTCAAGCCGCGGCCGCACTCGCCTTGCAGTGCCTGAATGCTGATCCAAAGTACAGGCCACAAATGGTGAATGTTTTAGCTGCATTGGAAGCACTTCAATCCTCAAATTCAATCACAAGGACCCCAAAAAGGTCAACTGAGAGTAGTAGTGCAAGCAGCAAGCATTCTTCCAATCATTCCCAAAAGTCATTTTCAAGTGCTGAAAAACTATGA 1182 0.4374 MGNCFIKPVANVSSTSLFGSNISQSKPKQDSSPPTQRSSSQNSVSNVIERSISSSLKSFTFSELKEATKNFRRENLIGEGGFGFVYKGWIDENTLAPTKPGTGIVVAIKKLKPESFQGHKEWLAEVNYLGQVHHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPIPWIMRINIATAVARGLAYLHSLDSNIIFRDLKASNVLLDSDFNAKISDFGLARDGPTGDNTHVSTRIIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEEEKEGVPEETLVDWARPFLGDSRRILRIMDTKLGGQYSRKGAQAAAALALQCLNADPKYRPQMVNVLAALEALQSSNSITRTPKRSTESSSASSKHSSNHSQKSFSSAEKL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242353g00003 393 FunFam PTI1-like tyrosine-protein kinase 3 157 365 - -
Stsc242353g00003 393 Gene3D Phosphorylase Kinase; domain 1 45 156 - -
Stsc242353g00003 393 Pfam Protein tyrosine and serine/threonine kinase 74 350 IPR001245 GO:0004672|GO:0006468
Stsc242353g00003 393 MobiDBLite consensus disorder prediction 20 45 - -
Stsc242353g00003 393 SUPERFAMILY Protein kinase-like (PK-like) 38 352 IPR011009 -
Stsc242353g00003 393 FunFam Serine/threonine-protein kinase BIK1 37 156 - -
Stsc242353g00003 393 PANTHER OS01G0588500 PROTEIN-RELATED 36 356 - -
Stsc242353g00003 393 Gene3D Transferase(Phosphotransferase) domain 1 157 381 - -
Stsc242353g00003 393 ProSiteProfiles Protein kinase domain profile. 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242353g00003 393 SMART serkin_6 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242353g00003 393 CDD STKc_IRAK 77 355 - -
Stsc242353g00003 393 ProSitePatterns Protein kinases ATP-binding region signature. 77 110 IPR017441 GO:0005524
Stsc242353g00003 393 MobiDBLite consensus disorder prediction 359 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242353g00003 Stsc-Chr242353 16472 18935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242353g00003 31 352 Glycoside Hydrolase AT3G07070 47.095 3.24e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc242353g00003 PK_Tyr_Ser-Thr 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242353g00003 - - gmx:102664409 583.178