Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242353g00002 ATGGCGATTGCAGCCCCAGGGCAACTGAATGTGAACGAATCCCCTTCTTGGGGATCCAGAAGCGTCGATTGCTTCGAGAAATTGGAGCAAATTGGCGAAGGCACATACGGTCAAGTTTACATGGCTAAAGAGATTAAAACTGGAGAAATTGTTGCTCTGAAGAAAATTCGAATGGACAATGAGAGAGAAGGGTTTCCTATAACGGCTATACGAGAAATCAAAATTCTTAAGAAGCTACACCATGAAAATGTGATCAAGCTAAAGGAAATTGTCACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGATGGTAACAAATATAAAGGGGGCATCTATATGGTCTTTGAATACATGGATCATGATTTGACTGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTGTTGACGGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATTAAAGGCTCAAATCTCCTTATAGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGACTGGCACGGTCATTTTCTAATGATCACAATGCAAATCTTACAAATCGTGTCATTACGTTATGGTACAGACCCCCTGAGTTGCTGCTAGGGACAACAAAGTATGGGCCAGCTGTAGATATGTGGTCTGTTGGGTGCATTTTTGCTGAACTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCTGAACAACTGAATAAAATATTTGAGCTGTGTGGAGCACCAGATGAGGTGAACTGGCCTGGGGTTTCCAAGACTCCTTGGTATAATCAATTTAAACCAACAAGGCCAATGAAAAGACGACTGAGGGAAGTTTTCAGGCATTTTGATCGTCATGCTCTGGAATTGTTAGAGAGGATGCTAACACTTGATCCAGCTCAGAGAATTACTGCGAAGGATGCTCTTGATGCTGAGTATTTCTGGACCGATCCATTGCCATGTGACCCTAAGAGTTTACCCAAGTATGAGTCATCACATGAGTTTCAGACAAAGAAAAAGCGTCAGCAACAACGGCAAAATGAAGAAATGGCCAAGCGCCAGAAAATGCAGCATCCCCAGCAGCACACGCGTCTCCCACCCATTCAACAGGCAGGACAACATGCACAAATGCGATCAGGACCTAACCAAAATATACATGGCTCTCAACCCCAAGTTGCTGCGGGACCCAGTCACCATTATGGGAAGCCTCGAGGTCCATCTGGTGGGCCAGGAAGATATCCACAAAGCGGGAACCCTGGTGGAGGATACAATCACCCTAATCGTGGAGGTCAAGGAGGGGGTGGCTATGGCAGCGGGCCTTATCCTCCTCAAGGGCGAGGGGCACCTTACGGTTCCAGCGGTATGCCTGGTGGTGGTGGTCCTCGCGGAGGAGGTGGTAGTGGCTATGGAGTCGGAGCCCCAACTTATCCCCAGCAAGGTGGTCCATATGGTGGGTCTGGCACCGGTCGTGGTTCAAACATGATGGGTGGAAACCGCAACCAACAATATGGATGGCAGCAATGA 1554 0.4691 MAIAAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLERMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEMAKRQKMQHPQQHTRLPPIQQAGQHAQMRSGPNQNIHGSQPQVAAGPSHHYGKPRGPSGGPGRYPQSGNPGGGYNHPNRGGQGGGGYGSGPYPPQGRGAPYGSSGMPGGGGPRGGGGSGYGVGAPTYPQQGGPYGGSGTGRGSNMMGGNRNQQYGWQQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242353g00002 517 FunFam Cyclin-dependent kinase C-2 12 121 - -
Stsc242353g00002 517 CDD STKc_CDK9_like 25 324 - -
Stsc242353g00002 517 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Stsc242353g00002 517 MobiDBLite consensus disorder prediction 370 401 - -
Stsc242353g00002 517 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242353g00002 517 MobiDBLite consensus disorder prediction 335 517 - -
Stsc242353g00002 517 FunFam Cyclin-dependent kinase C-2 122 364 - -
Stsc242353g00002 517 PANTHER CELL DIVISION PROTEIN KINASE 23 330 - -
Stsc242353g00002 517 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242353g00002 517 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242353g00002 517 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Stsc242353g00002 517 MobiDBLite consensus disorder prediction 491 517 - -
Stsc242353g00002 517 MobiDBLite consensus disorder prediction 337 366 - -
Stsc242353g00002 517 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Stsc242353g00002 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Stsc242353g00002 517 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242353g00002 Stsc-Chr242353 12030 16237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242353g00002 1 517 Core Cell Cycle Gene Families AT5G10270 78.585 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc242353g00002 Pkinase 2.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242353g00002 K08819 - gmx:100793565 876.315