Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242352g00002 ATGTTAACTTGCATAGCATGTTCCAAGCAACTCAACAATGGATCTCTTCACCAGCCAGAAGATGAAGAAGCTGTTCATACACCAAGCACGAAGCAAGCCATAAAGGCTCTCACTGCCCAGATCAAGGACATGGCAGTGAAGGCTTCTGGAGCATATAAGAATTGCAAGCCTTGTTCTGGATCTTCAAACGGTAACAGGAAAGGGAATTATGCTGATTCTGATATGGGTTCGGATTCAGCGAGGTTTCACTGGGCCTACCGAAGAACGGGTAGCTCCAATTCAACCCCAAGGATGTGGGGGAAGGAAATGGAAGCCAGGTTGAAACGGCTTTCGAGTGGGGAAGGGACGCCGGCATCGGTTAGTGGACGAACTGAGTCAGTGGTGTTCATGGAGGAGGATGAGCCTAAAGAATGGGTTGCACAAGTGGAGCCCGGTGTGCTCATTACTTTTGTTTCGTTGCCTCAGGGTGGGAATGATCTGAAGCGCATACGGTTCAGTCGAGAGATGTTTAATAAATGGCAAGCTCAGAGGTGGTGGACGGAAAACTATGACAAGGTCATGGAGTTATACAATGTTCAAAGGTTCAATCAACAAGCTGTTCCTCTTCCAACCCCACCTAGATCTGAAGATGAGCAAAGTTCAAGGATTGAATCTGTGAGGGACAGCCCTGTAACTCCTCCTCTTAGCAAAGAGCCGCTGCCTAGTCATTTTCGCCACCCACTCGGAATGGGATATTCTTCATCGGATTCACTGGATCACCACCAAACACAACCTCGCCCTTGCTATGAAACTAGCGGTCTAGCCTCAACACCTAAACTCTCCAACATTACTGCAACAAAAACTGAAACATCATCCGTGGATGCTTCAGCAAGAACAAGTTCATCGGGAGAGGGAGACCACTCGGGTGAGCTCTCAATCAGCAATGCCAGTGATATGGAAACTGAATGGGTTGAACAGGATGAACCGGGAGTATACATCACTATCAGAGCACTGCCAGGAGGAACCAGAGAACTTCGGCGAGTACGGTTCAGCCGAGAGAGGTTTGGAGAAATGCATGCTAGATTATGGTGGGAGGAGAACCGTGCGAGGATACAGGAGCAATACTTGTGA 1110 0.4847 MLTCIACSKQLNNGSLHQPEDEEAVHTPSTKQAIKALTAQIKDMAVKASGAYKNCKPCSGSSNGNRKGNYADSDMGSDSARFHWAYRRTGSSNSTPRMWGKEMEARLKRLSSGEGTPASVSGRTESVVFMEEDEPKEWVAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWTENYDKVMELYNVQRFNQQAVPLPTPPRSEDEQSSRIESVRDSPVTPPLSKEPLPSHFRHPLGMGYSSSDSLDHHQTQPRPCYETSGLASTPKLSNITATKTETSSVDASARTSSSGEGDHSGELSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSRERFGEMHARLWWEENRARIQEQYL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242352g00002 369 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 369 IPR044532 -
Stsc242352g00002 369 MobiDBLite consensus disorder prediction 248 310 - -
Stsc242352g00002 369 ProSiteProfiles BRX domain profile. 136 191 IPR013591 -
Stsc242352g00002 369 ProSiteProfiles BRX domain profile. 314 369 IPR013591 -
Stsc242352g00002 369 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Stsc242352g00002 369 Pfam Transcription factor regulating root and shoot growth via Pin3 313 368 IPR013591 -
Stsc242352g00002 369 Pfam Transcription factor regulating root and shoot growth via Pin3 136 190 IPR013591 -
Stsc242352g00002 369 MobiDBLite consensus disorder prediction 199 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242352g00002 Stsc-Chr242352 26480 30278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242352g00002 1 369 Major Intrinsic Protein MIP AT1G31880 47.409 5.61e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242352g00002 - - gmx:100805480 658.292