Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242351g00003 ATGTTGTTTTCTCCTAAGATTAGTTTGACCATAGTCACAGCCCTTTCCATTCTGACCATACTTTCGTATGCAGATAACAATACTAGGTTCTTGGAGGTTGAAAATGAAGCATTGAAAGCTTTCAAGAACTCCATCACCCTTGACCCAAATGGAACACTTGCAGATTGGATTGAAACCCAGCCTCATTGCAACTGGTCTGGCATTCAATGTGACCCTTCTTCAAGCCATGTTATCTCAGTATCTCTGGCTTCTCAGCAGCTCCATGGAGAGATTTCACCCTTCTTGGGAAACATTTCAACCCTTCAGGTTCTTGATTTAACTTCAAATTCGTTTACTGGCCATATTCCTTATCAGCTAAGCCATTGCACTCAACTCACCGAGCTTAGTCTCTTTGAGAATTCTCTCTCAGGTCCAATCCCTCCAGAGTTAGGAAACTTGAAAAACTTGCAGTATTTGGATTTAGGGAGCAATTTCTTGAATGGAACCCTTCCTGAGAGCATATTCAACATCACTTCTTTGTTGGGAATTGCTTTCAATAACAACAACCTCACTGGTACAATACCATCACACATAGGCAAGCTTCTTAACCTTATTCAAATTATAGGATATGGGAATAGCTTGGTTGGGTCTATACCTCCTTCAATAGGGAACCTTGAAGCTTTGCAGGCTCTTGATTTTAGCCAAAACCAGTTATCAGGTGTAATACCAAAAGAGATTGGAAACCTGACAAATTTACAACTCCTTGTCTTGTTTCAAAATTCATTGTCTGGTAAAATCCCTTCAGAACTTGCCAAGTGCAAGAATCTTTTAAGCCTTGAGTTGTATGAAAATCACTTCACTGGAAGCATTCCTCCCGAGCTAGGAAACTTAGTTCATTTAGAAACGTTGCGGTTATACGGCAATAACTTGAACTCCACGATTCCACCTTCCATGTTCCAATTGAAATCATTGACACATTTAGAACTCTCCAACAATAACTTGGAGGGAACAATATCTCCTGAGATAGGATCTTTAAGTAACTTAACATATTTAGTCCTGCATCTAAATAAGTTCACTGGTCACATCCCTTCATCAATAACAAGCTTGAGAAACTTAACATATCTTTCAATGAGCCAGAATCATTTTTCAGGTGAAATTCCTACAGACATTGGTGTGCTTCAAAATTTGAAGTTTCTAGTCCTGAACTTGAATAATTTACATGGATCCATCCCTCCTAGCATTACCAATTGTACTAGCCTAGTGAATGTAAGTTTATCTTTCAATTCATTAACTGGGAAAATTCCTGAGGGATTTTCTAGGATGCCTAATCTCACTTTCCTGTCTCTTGCCCAAAACAACTTGTCCGGGAACATCCCGGACGACCTTTTTGATTGCTCAAACCTTCGAACACTAAGTTTGGGAGTAAACAATATCAGTGGAGAGATAAAACCTTCCATTCAAAACCTGTTTAATGTTCATACACTGCAGCTGAATGTAAATTCCTTCATAGGATCAATTCCACCTGAGATTGGAAACTTAAGTCAACTAATCACTCTAACCCTTGCTGAAAATAGGTTGTCTGGTTCAATTCCACCAGAATTGTCCAAACTTTCTCTTCTTCAGGGGCTCTTCCTCCATGACAATGAGTTAGAAGGTACAATACCTGCTACACTTTCTGGTATCAAACCACTAACTAAACTTTTGCTGCATAGCAACAAGTTGGTTGGCCATATTCCGGATTCTATCTCACAGCTTGATATGCTTTCATACTTGGACCTTCATGACAACAAGCTTAATGGTTCCATTCCAAGAAGCATGGTGAATCTTAATAAGCTTTTGATGTTGGATCTCTCTCACAACCACCTCACAGGATCAATTCCCAGTGATGTCATTGCACACTTCAAAGACATGCAGATGTATCTCAACCTTTCTTACAACAACTTTGCTGGAAGTGTTCCAGATGAGTTGGGCATGTTGGAAATGGTACAAGCCATTGATATTTCAAACAATAATCTTTCAGGAGTCATTCCCAAGAGAATTGCTGGGTGCAGAAATCTGTTCAATCTTGATTTTTCAGGAAACAAAATTTCAGGACCAATTCCTGCAGAAGTTTTTAGTCACATGGACTTGCTTCAAAACTTGAACCTTTCAAGAAACCATTTAGATGGCCAAATCCCTGAAGTCTTGGCACAACTTGAGCATCTCACTTCCCTGGATCTTTCCCATAATAACTTGAAGGGAAAGATTCCTCAGGGCTTTGCAAATCTCTCCAACCTGATGCATCTCAACCTTTCTTTCAATCAACTCGAAGGCCCTGTGCCTGTGACTGGAGTATTTGCACATATCAATGCATCTGATATTAAGGAAAATCAAGATCTTTGTGGAGCAAAATTCTTAAGGCCATGCAGAGAAGGTAATAATCATGCTCTATCTAAAAGGAGCATAGCTATTATTGCTGCACTTGGATCTCTTGCAATACTCCTACTTCTAGTGCTTGTGATTTTGATTCTCAACCGAGGCAACAAACTTTGCAATTCCAAGCAAAAAGAGAGTAGTGAGAATCAAGAACCAGATTATACGTCGGCATTGGCTCTTAAAAGATTCATTCCAAGTGAGTTAGAGAATGCCGCTGGCTTATTCAGAGAAGACAACATCATTGGCACTAGCGGTTTGAGCACAGTTTACAAGGGCCAACTTGAACAAGGCCAGATTGTAGCCATCAAAAGATTGAATTTGCATCACTTCTCTGCAAACACTGATAAGATCTTCAAAACAGAAGCCAGCACCTTGAGCCAGCTGAGGCATAGAAATTTGGTGAAGGTTCTTGGTTATGCATGGGAGAGTGGGAAATTGAAAGCTCTAGTTCTAGAGTACATGGAAAATGGGAATTTGGATACCATCATACACGACGAATCGGTTGATCAGTCTAGGTGGACATTATCCGAAAGGATCCGTGTTCTGATTTCCATTGCTAGCGGATTGGACTACTTACACACTGGTTATGACTTTCCAATTGTGCACTGTGACTTGAAACCTTCTAACATCCTTTTAGATAGAGACTGGGAAGCTCATGTCAGTGATTTCGGGACGGCTCGAATTCTAGGTGTCCATCTGCAGGATGGTAACACCCTTTCCTCATCTGCAGCTTTGCAAGGCACAGTTGGCTATCTTGCACCAGGTTTAAGCCTTTTCTATCTCACTTAA 3183 0.4031 MLFSPKISLTIVTALSILTILSYADNNTRFLEVENEALKAFKNSITLDPNGTLADWIETQPHCNWSGIQCDPSSSHVISVSLASQQLHGEISPFLGNISTLQVLDLTSNSFTGHIPYQLSHCTQLTELSLFENSLSGPIPPELGNLKNLQYLDLGSNFLNGTLPESIFNITSLLGIAFNNNNLTGTIPSHIGKLLNLIQIIGYGNSLVGSIPPSIGNLEALQALDFSQNQLSGVIPKEIGNLTNLQLLVLFQNSLSGKIPSELAKCKNLLSLELYENHFTGSIPPELGNLVHLETLRLYGNNLNSTIPPSMFQLKSLTHLELSNNNLEGTISPEIGSLSNLTYLVLHLNKFTGHIPSSITSLRNLTYLSMSQNHFSGEIPTDIGVLQNLKFLVLNLNNLHGSIPPSITNCTSLVNVSLSFNSLTGKIPEGFSRMPNLTFLSLAQNNLSGNIPDDLFDCSNLRTLSLGVNNISGEIKPSIQNLFNVHTLQLNVNSFIGSIPPEIGNLSQLITLTLAENRLSGSIPPELSKLSLLQGLFLHDNELEGTIPATLSGIKPLTKLLLHSNKLVGHIPDSISQLDMLSYLDLHDNKLNGSIPRSMVNLNKLLMLDLSHNHLTGSIPSDVIAHFKDMQMYLNLSYNNFAGSVPDELGMLEMVQAIDISNNNLSGVIPKRIAGCRNLFNLDFSGNKISGPIPAEVFSHMDLLQNLNLSRNHLDGQIPEVLAQLEHLTSLDLSHNNLKGKIPQGFANLSNLMHLNLSFNQLEGPVPVTGVFAHINASDIKENQDLCGAKFLRPCREGNNHALSKRSIAIIAALGSLAILLLLVLVILILNRGNKLCNSKQKESSENQEPDYTSALALKRFIPSELENAAGLFREDNIIGTSGLSTVYKGQLEQGQIVAIKRLNLHHFSANTDKIFKTEASTLSQLRHRNLVKVLGYAWESGKLKALVLEYMENGNLDTIIHDESVDQSRWTLSERIRVLISIASGLDYLHTGYDFPIVHCDLKPSNILLDRDWEAHVSDFGTARILGVHLQDGNTLSSSAALQGTVGYLAPGLSLFYLT 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242351g00003 1060 ProSiteProfiles Protein kinase domain profile. 873 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242351g00003 1060 Gene3D Phosphorylase Kinase; domain 1 833 951 - -
Stsc242351g00003 1060 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Stsc242351g00003 1060 Pfam Leucine rich repeat 704 762 IPR001611 GO:0005515
Stsc242351g00003 1060 Pfam Leucine rich repeat 557 615 IPR001611 GO:0005515
Stsc242351g00003 1060 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Stsc242351g00003 1060 Pfam Leucine Rich Repeat 316 338 IPR001611 GO:0005515
Stsc242351g00003 1060 PRINTS Leucine-rich repeat signature 605 618 - -
Stsc242351g00003 1060 PRINTS Leucine-rich repeat signature 725 738 - -
Stsc242351g00003 1060 SMART LRR_typ_2 506 530 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 338 362 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 749 774 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 386 410 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 146 170 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 701 724 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 602 626 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 434 458 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 218 242 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 290 314 IPR003591 -
Stsc242351g00003 1060 SMART LRR_typ_2 725 748 IPR003591 -
Stsc242351g00003 1060 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Stsc242351g00003 1060 Gene3D Ribonuclease Inhibitor 331 430 IPR032675 -
Stsc242351g00003 1060 Gene3D Ribonuclease Inhibitor 524 628 IPR032675 -
Stsc242351g00003 1060 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 623 799 - -
Stsc242351g00003 1060 Gene3D Ribonuclease Inhibitor 629 803 IPR032675 -
Stsc242351g00003 1060 Gene3D Ribonuclease Inhibitor 195 267 IPR032675 -
Stsc242351g00003 1060 Gene3D Ribonuclease Inhibitor 268 330 IPR032675 -
Stsc242351g00003 1060 ProSitePatterns Serine/Threonine protein kinases active-site signature. 998 1010 IPR008271 GO:0004672|GO:0006468
Stsc242351g00003 1060 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 833 951 - -
Stsc242351g00003 1060 Gene3D Transferase(Phosphotransferase) domain 1 952 1056 - -
Stsc242351g00003 1060 SMART serkin_6 873 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242351g00003 1060 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 633 1054 - -
Stsc242351g00003 1060 SUPERFAMILY L domain-like 34 309 - -
Stsc242351g00003 1060 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 31 186 - -
Stsc242351g00003 1060 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 552 - -
Stsc242351g00003 1060 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 553 622 - -
Stsc242351g00003 1060 SUPERFAMILY RNI-like 249 623 - -
Stsc242351g00003 1060 SUPERFAMILY L domain-like 556 776 - -
Stsc242351g00003 1060 SMART LRR_sd22_2 218 244 - -
Stsc242351g00003 1060 SMART LRR_sd22_2 146 172 - -
Stsc242351g00003 1060 SMART LRR_sd22_2 578 604 - -
Stsc242351g00003 1060 SMART LRR_sd22_2 725 751 - -
Stsc242351g00003 1060 SMART LRR_sd22_2 458 484 - -
Stsc242351g00003 1060 SMART LRR_sd22_2 314 340 - -
Stsc242351g00003 1060 FunFam Os07g0541700 protein 952 1042 - -
Stsc242351g00003 1060 Pfam Protein kinase domain 874 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242351g00003 1060 Gene3D Ribonuclease Inhibitor 431 523 IPR032675 -
Stsc242351g00003 1060 ProSiteProfiles Leucine-rich repeat profile. 727 750 IPR001611 GO:0005515
Stsc242351g00003 1060 FunFam Piriformospora indica-insensitive protein 2 211 309 - -
Stsc242351g00003 1060 SUPERFAMILY Protein kinase-like (PK-like) 849 1054 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242351g00003 Stsc-Chr242351 23947 27129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242351g00003 31 1052 Receptor kinase-like Gene Family AT5G46330 54.466 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc242351g00003 Pkinase 2.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242351g00003 K13420 - gmx:100817960 1529.61