Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242349g00002 ATGGTGAGTATCCAATCTCAACACACTATCATTCCTTCCTCTCCAACCCCAAACGGAAAACTCTTTTCCCTCTGCGAGCAAGTCAAGCTTCGCACTCATGCTCCTCTTCTCTACGCATATGGCAACGCTTCGTTGCCGTCGCCGTCGTCAGCTCTCAATAACCATCTCTTTCACACGCTCATGATCTCTCTCAGCAAAGCTTTGTCAATCTACTACCCGCTAGCGGGTAGGTTGAGATTCATCGACGGTTCGAGGTGGGAGATCATTTGCAACGCCAAAGGAGCGTTGCTAATGGACGCAATTTGCGACGGGAAGAGCATGCACGATTTCTGTGGCGACGATTTTGTCCCTACCGGTTTGGTTTCGCAGCTAATGCCGAACATAGATTACGATGCTCCCCTTGACGACACGCCCTTTCTGGTGGTGCAAGTCACGCGCTTCAATTGCGGCGGTTTCACCATAGGCGTCGCCATGTGTCGCGCCGTCATTGACGGAATGGCAACCGTGCGGTTCATGAATACGTGGGCTAAGTTAGCCAGAGGAGAATCTTTAGACCCATCTGAACAATTCCCCTGCTATGATCCAAGTTTGTTAAACTCACGCGCGTTGTTGCTTTCCAAGAATGTTAATAATTTGCATCAGCATCAGCATTTAGACATATTCGGAACTCCTCCTCCATGGTTAGGCACATTTAGAGAAGACTCAAGAGTTGTTGTTGGAGTTGTCAAAATCACAAAAGAACAAGTCAACAAACTCAAGATGAAAGCCGCAATTGAAAACGACAAGAGTACTACTCCGTTCTCGAGTTTCGAGATCATTGCGGGGATTTTATGGAGGTGTGTCACTAAAGCGCGTTATCAAGGAATAGGCGATCAACCGACGAGGCTGATCACCTTAGTTAATTGTCGTAACCGTCTAAAACCACCGCTTCCTGATACTTATCCAGGAAATGCAGTGTTTTCGACGGTTACGAAAACTTGCTCCTTTACTGACCTGATGCAGAATTCTCTAAGTTCTACAACAGAGAAAGTGAAGGAGTCGATAGCGAGAGTGGACGACAAGTTCGTGAGAGAAGCACTTGGTTGCATTAGTAAAGCCAAGGACATGAATTTGTTGAGGTATAACGTTCACTACCCGGCAAAGAGTGTTCACAAAGGAGCGTTTAAGGGCAACCCGAACTTGTTTATTGTGAGCTGGATGAATTTCTCGTATAAGAATTTGGATTTCGGGTTCGGGGCACCGGTTCATTTTGGACCGGGTTATATGGATTCTGAAGGGAAGGCTTTCGTGATGAACAATGTTAGTGGTGATGGATTCAATGTGGCTATTGCTTTGGATTCATCTCACATGAATGCTTTCAAGAAATTCTTTTATGACCAAATAATCGAAGAGGTGTTTGTTCCTATTTCCAAATTGTGA 1419 0.4574 MVSIQSQHTIIPSSPTPNGKLFSLCEQVKLRTHAPLLYAYGNASLPSPSSALNNHLFHTLMISLSKALSIYYPLAGRLRFIDGSRWEIICNAKGALLMDAICDGKSMHDFCGDDFVPTGLVSQLMPNIDYDAPLDDTPFLVVQVTRFNCGGFTIGVAMCRAVIDGMATVRFMNTWAKLARGESLDPSEQFPCYDPSLLNSRALLLSKNVNNLHQHQHLDIFGTPPPWLGTFREDSRVVVGVVKITKEQVNKLKMKAAIENDKSTTPFSSFEIIAGILWRCVTKARYQGIGDQPTRLITLVNCRNRLKPPLPDTYPGNAVFSTVTKTCSFTDLMQNSLSSTTEKVKESIARVDDKFVREALGCISKAKDMNLLRYNVHYPAKSVHKGAFKGNPNLFIVSWMNFSYKNLDFGFGAPVHFGPGYMDSEGKAFVMNNVSGDGFNVAIALDSSHMNAFKKFFYDQIIEEVFVPISKL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242349g00002 472 Pfam Transferase family 1 458 - -
Stsc242349g00002 472 Gene3D - 1 212 IPR023213 -
Stsc242349g00002 472 Gene3D - 231 460 IPR023213 -
Stsc242349g00002 472 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 12 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242349g00002 Stsc-Chr242349 9899 11601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242349g00002 2 459 Monolignol Biosynthesis Gene Families AT5G48930 34.056 2.14e-70 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242349g00002 K13065 - gmx:100775549 541.191