Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242348g00007 ATGGCATCAAATGACCAATCACCATCTTTGGAGATATTAGTTCGAACACCTGAAGAGTTCTCAATCTGGACTGGACCCCCATTTGCCAATGGTCAACCTGGTGTCAAGCTTGAGAAAGTTAGCTGCGTCAATGCGAAATTCAGCGATGATGGATCTAGACTCTTGGTGACAAAATCCAACTCGGTGATTAGCATATATGACTGCAAGAGTGCCAAAGAGATTAGGTCTTTTGAAGTCCCAAATGTCACTTCTGCTATCTTGTCCCCTTGTGGAACTTTTTTGCAAACATTTCAAAAGCCTTCGGCACCACAAGAGAAGAATTTCACATTGTGGAAAACGGAGACTGGTGATCCTGTTTATCAACACTCCCAAAAGAATCTAACAAAAACCACCTGGCCTGCTATTCAGTTCAGCTCTGATGAGGGCACTGCATGCCGGATGGCGACTAATGAGGTGCAGTTTTTTGACACAAGGGATTTTTCTAAGGGGATCATTGATCGATTAAGAGTTCCAGGAGTTGCTGCAATTGAGCTTTCTAGTGCACCTGGGTCTCATGTAGCTGTATATGTGCCAGAATCCAAGGGAATTCCTGCCTGTGTACAAATATTTCCTTGTGGAAATGCTTCTCAAAGTCAAGCTGTTGCTCGGCGGAGTTTTTTCCGATGTTCAACAACCCAACTTAAATGGAATCATGGCTCTACTGGTCTTTTAGTGCTGGTGCAGTCAGATGTTGACAAAACTAACCAGAGTTACTATGGGGAGTCGAAGTTATTCTATCTAACAATAGATGGAAAGCATGAAGGGCTTGTGCCTCTTTCTAAAGAGGGTCCAGTTCATGATGCTCAGTGGTCATATTCTGGCTTAGAATTTGCTGTAGTATATGGTTTCNNNNNNNNNNAAGCAACTTTGTTTGACAAGAAGTGCAATCCTCTGCTGGAGCTCGGAACCGGTCCTTATAACACCATTAGATGGAACCCGAAAGGGAAATTTTTATGTTTGGCTGGCTTTGGAAACTTGCCTGGTGATATGGTATTCTGGGATTTTGCGGATAAGAAACAGCTTGCAGCAACTAAGGCTGAATGGTCTGTGACAAGTGAATGGTCTCCAGATGGGCTCTATTTCATGACAGCGACGACAGCTCCGAGGCTTCAAGTTGACAATGGGATCAAGATCTTTCACTACAATGGGTCACTGTACTTCAAAAAGATGTTTGACAAGTTGTTCCAGGCTGACTGGAAACCGGAGTCAGTGAATAAGTTTGGTGACATCACCGAATTAATCAAGTCTCTCAATTTGGGTAAAGTCGAAGATAAAAAGCCATCAGGTCCAGGACCAAAATCGGCTCAGGCTTCTAACAAACCGTCTTCTACCAACCCCACTGCACAAAAGCCTGCCGCGTATCGCCCACCTCATGCTAAGAATGCCGCTGCAGTTCAGGCTGAGTTGCTTGGAATAGGAGAGAGCAGCCCTGCAGGATCAATGAGCAAGAATGCATTAAAGAACAAGAAGAAGAGGGAGAAGCAAAAGGAGAAAAAGGCCGCTTCGGATGCCACGGATGCCAGTTCATAG 1569 0.4436 MASNDQSPSLEILVRTPEEFSIWTGPPFANGQPGVKLEKVSCVNAKFSDDGSRLLVTKSNSVISIYDCKSAKEIRSFEVPNVTSAILSPCGTFLQTFQKPSAPQEKNFTLWKTETGDPVYQHSQKNLTKTTWPAIQFSSDEGTACRMATNEVQFFDTRDFSKGIIDRLRVPGVAAIELSSAPGSHVAVYVPESKGIPACVQIFPCGNASQSQAVARRSFFRCSTTQLKWNHGSTGLLVLVQSDVDKTNQSYYGESKLFYLTIDGKHEGLVPLSKEGPVHDAQWSYSGLEFAVVYGFXXXXATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDFADKKQLAATKAEWSVTSEWSPDGLYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPESVNKFGDITELIKSLNLGKVEDKKPSGPGPKSAQASNKPSSTNPTAQKPAAYRPPHAKNAAAVQAELLGIGESSPAGSMSKNALKNKKKREKQKEKKAASDATDASS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242348g00007 522 PIRSF Transl_init_eIF2A 4 522 IPR011387 GO:0003743|GO:0006413
Stsc242348g00007 522 MobiDBLite consensus disorder prediction 434 522 - -
Stsc242348g00007 522 FunFam Eukaryotic translation initiation factor 2A 30 185 - -
Stsc242348g00007 522 Gene3D - 31 391 IPR015943 GO:0005515
Stsc242348g00007 522 Coils Coil 496 516 - -
Stsc242348g00007 522 Pfam Eukaryotic translation initiation factor eIF2A 217 410 IPR013979 -
Stsc242348g00007 522 SUPERFAMILY DPP6 N-terminal domain-like 42 395 - -
Stsc242348g00007 522 MobiDBLite consensus disorder prediction 445 463 - -
Stsc242348g00007 522 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 10 517 IPR011387 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242348g00007 Stsc-Chr242348 24104 29920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242348g00007 131 414 Eukaryotic Initiation Factors Gene Family AT5G27640 23.377 9.78e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242348g00007 K15026 - gmx:100811589 853.588