Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242348g00006 ATGGCGACTAATGAGGTGCAGTTTTTTGACACAAGGGATTTTTCTAAGGGGATCATTGATCGATTAAGAGTTCCAGGAGTTGCTGCAATTGAGCTTTCTAGTGCACCTGGGTCTCATGTAGCTGTATATGTGCCAGAATCCAAGGGAATTCCTGCCTGTGTACAAATATTTCCTTGTGGAAATGCTTCTCAAAGTCAAGCTGTTGCTCGGCGGAGTTTTTTCCGATGTTCAACAACCCAACTTAAATGGAATCATGGCTCTACTGGTCTTTTAGTGCTGGTGCAGTCAGATGTTGACAAAACTAACCAGAGTTACTATGGGGAGTCGAAGTTATTCTATCTAACAATAGATGGAAAGCATGAAGGGCTTGTGCCTCTTTCTAAAGAGGGTCCAGTTCATGATGCTCAGTGGTCATATTCTGGCTTAGAATTTGCTGTAGTATATGGTTTCNNNNNNNNNNAAGCAACTTTGTTTGACAAGAAGTGCAATCCTCTGCTGGAGCTCGGAACCGGTCCTTATAACACCATTAGATGGAACCCGAAAGGGAAATTTTTATGTTTGGCTGGCTTTGGAAACTTGCCTGGTGATATGGTATTCTGGGATTTTGCGGATAAGAAACAGCTTGCAGCAACTAAGGCTGAATGGTCTGTGACAAGTGAATGGTCTCCAGATGGGCTCTATTTCATGACAGCGACGACAGCTCCGAGGCTTCAAGTTGACAATGGGATCAAGATCTTTCACTACAATGGGTCACTGTACTTCAAAAAGATGTTTGACAAGTTGTTCCAGGCTGACTGGAAACCGGAGTCAGTGAATAAGTTTGGTGACATCACCGAATTAATCAAGTCTCTCAATTTGGGTAAAGTCGAAGATAAAAAGCCATCAGGTCCAGGACCAAAATCGGCTCAGGCTTCTAACAAACCGTCTTCTACCAACCCCACTGCACAAAAGCCTGCCGCGTATCGCCCACCTCATGCTAAGAATGCCGCTGCAGTTCAGGCTGAGTTGCTTGGAATAGGAGAGAGCAGCCCTGCAGGATCAATGAGCAAGAATGCATTAAAGAACAAGAAGAAGAGGGAGAAGCAAAAGGAGAAAAAGGCCGCTTCGGATGCCACGGATGCCAGTTCATAG 1131 0.4447 MATNEVQFFDTRDFSKGIIDRLRVPGVAAIELSSAPGSHVAVYVPESKGIPACVQIFPCGNASQSQAVARRSFFRCSTTQLKWNHGSTGLLVLVQSDVDKTNQSYYGESKLFYLTIDGKHEGLVPLSKEGPVHDAQWSYSGLEFAVVYGFXXXXATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDFADKKQLAATKAEWSVTSEWSPDGLYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPESVNKFGDITELIKSLNLGKVEDKKPSGPGPKSAQASNKPSSTNPTAQKPAAYRPPHAKNAAAVQAELLGIGESSPAGSMSKNALKNKKKREKQKEKKAASDATDASS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242348g00006 376 MobiDBLite consensus disorder prediction 288 376 - -
Stsc242348g00006 376 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 2 371 IPR011387 GO:0003743|GO:0006413
Stsc242348g00006 376 Coils Coil 350 370 - -
Stsc242348g00006 376 Pfam Eukaryotic translation initiation factor eIF2A 71 264 IPR013979 -
Stsc242348g00006 376 MobiDBLite consensus disorder prediction 299 317 - -
Stsc242348g00006 376 SUPERFAMILY WD40 repeat-like 47 249 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242348g00006 Stsc-Chr242348 24104 29920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242348g00006 1 268 Eukaryotic Initiation Factors Gene Family AT5G27640 23.793 1.33e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242348g00006 K15026 - gmx:100810278 618.616