Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242344g00001 ATGGATCTTAAAATACCAATAGATGACCAGTTCTCCAAGTTGCATCCTTCATTACCATTAAGCACCAGAATTGGAATAGTTGGTGCTGGTCCAAGTGGTTTATCAGCTGCATATGCACTATGCAGGCTTGGTTACAATAATGTCACAGTTTTGGAGAAGCATCGTACAGTTGCTGGCATGTGTGAATCAGTAGAAATTGAAGGGAAAATTTATGATCTAGGTGGGCAAGTTCTTGCGGCAAATAGTGCTCCAGTCATCTTTCACCTGGCGAAAGAGACGGGTTCAGAGCTAGAAGAAATGGATTCCCACAAGCTTGCTCTCATTGACCCTAACTCTGGAAAGTATCAAGATGTTAATGTTGCTGATGATTATGTTTCTGTTATGACACTTACCTTGGATATTCAGGAAAAGGTGAAGAACTCAGAGCATTTTGGGGTGCATGCTGTTAGCCAATTTGCTTCAGACTTGACTTTAGATTATCTTGAGAGTCATGGACTCAAATCTCTTCCGAAATCAGTGGCTTATGGTTACACTGCCTCAGGATTTGGATTTGTTCAAGACTTGCCTTATGCCTATATTCACGAATTTACCAGAACATCAATGGCTGGAAAGATTCGTCGTTTCAAATGTGGATATACAAGTCTATGGAAGAAGATTGCTGAATCCCTTCCCATTAAACTTCATTGTAACACTCAAGTGTTGGGGATCACGCGTAGCTCTGAAAGTGTCAAAGTAAATGTCAAAACCTTAAATGAAAATGAAACCATGGAATTTGATAAGATCATAGTCTCTGGTAATTTTCCATTAAGATATGGAACAACTTACAGATCAGTGCCATCACCTTACACAGAGTCTGAAGAAGAAGTAATGGATGCAACTGAACTTGAAAAGGAATTGTTCAGCAAAGTAGAGACATTTGATTACTACACTACAGTTTTTAAGATTAAAGGGTTTCAACATCTTCCTATTGGATTCTTTTACTTTGGTGAATATATGGAAGATCCCAGCACCATTGGAAATCCAGTTGCAATGCAAAAGTTTTATGATGACACTGACATATTCTTGTTCTGGTCCTATGGCAACTCTTCTGATATTAAGGGACCAGCTGTCACTGAGCTTGTGATCAAAGCGGTTGAATCCATGGGTCGAAAAGTTGAAAAATTCATCCTTCAACGTCGCTTCAAGTATTTTCCGCATGTTAAAAGCCAAGATATGAAATCTGGTTTCTATGAAAAGCTGGAGTCAGAACTTCAAGGTTCAAGGAATACTTACTATGTTGGTGGCCTTATGGCTTTTGAGCTCACAGAGAGAAATTCATCTTATGCCATGGCTCTGATGTGCAAGAACTTTGCAACTAGTAGTGATTTGCCAATGTTCCCTTACACTAAGAGTTTGTTTCCACTGCAAACTGAATTCCAAAAAAGGGAGCCTAGAGAACTTGATGAATTGCCTGGAGTTCAATTTCCTGATTTGCCTTCTTTGAATAGCTATGTGAAGCATTGGGGAACTAATCAAATCACTCAAAATAGAACACTTTATTCTTGGATAAATGAAGAAGGAGCAGTTGTATGCAAAAGGACCTATGCAGAACTAAATTCTAATGCTTCTTGTATTGCTCATAATCTCTTAACATGCCCAAAGCCGATCATCAAGGCCGGTGACAAGGTTCTCCTAGTCTATGTCCCGGGTCTGGATTTTGTTGATGCCTTCTTTGGATGCATAAGAGCTAAAGTTATTCCAGTTCCTGTTCTTCCTCCAGATCCCATGCAAAAAAGTGGACAAGCACTTCTGAAAATTGAGAACATTGTGAAGTCATGCGGCATAGTGGCAATTTTATCAACAAAAGGCTATCACTCCGCGGTGCGCGCCGGTTTTGTGAAAGGTCTAATCTCATTATCTGGAAATGATGGGAAATCTTCAGCTAGATGGCCAAATCTTCCATGGATACACACTGATTCATGGAACCACAAGTCAAAAAGTCTATCTTCTGAATATCTATATGATCAATCTGAGCCTCAACCTGGTGATATATGTTTCTTGCAATTTACCTCAGGTTCAACTGGGGATGCTAAAGGAGTGATGATTACCCATGGAGGTCTTATTCATAATGTGAAGTTGATGAGAAGAAGATACAAGAGCACCTCAAGGACCATGCTAATAAGCTGGCTTCCTCAGTACCATGACATGGGACTAATTGGAGGACTTTTCACAGCTCTTGTTAGTGGTGGATCAGCAGTTTTGTTTTCACCAATGACATTTATCAAGAAGCCATTGTTGTGGCTTGAAACTATGAGCAAGTATCAAGCAACTCATAGTGCTGCACCTAACTTTGCTTTCGAGTTGGTGATCCGAAGGTTAGAGTCTAACAAGGATAAGCTTCAACATTTAGACCTTTCCTCCATGATTTTTCTTATGGTTGCTGCTGAACCAGTGAGGCAGAAGACATTAAAAAGATTTCTTGAGCTAACCAGTCCTATTGGCTTATCACAAAAAGTGCTAGCTCCAGGATATGGCTTGGCAGAAAACTGTGTGTTTGTCAGTTGTGCATTCGGACAAGGTAATCCTATTCTTGTTGACTGGCAAGGAAGAATCTGCTGTGGATATATCCAACCAGGAGATGTTGATGTTGACATTAGAATTGTTGATCCTGAGAGTGGTGAAGAGCTTCAAGAAGATGGAAAAGAAGGAGAGATATGGATAAGTAGTCAAAGTGCAGGAATAGGATATTGGGGAAAAGATGAACTGGGCCAAAAAACTTTTCAGAACGAGCTTCAAAACCATCCTGGAAGAAACTACACAAGGACAGGTGACTTGGGAAGGATAATAGATGGGAAGCTATTCATCACAGGAAGGATCAAGGACTTGATCATTGTTGCTGGGAGAAACATATACTCATCAGATGTTGAAAAGACAGTTGAGAATTCATCTGAATATCTTCGTCCTGGGTGTTGTGCCGTCATTGGTGTCCCTGAGGATATTCTGTCAGCAAAAGGTATTGCCTTGCCTGAAGGGTCTGACCAAGTTGGTTTGGTTGTGATTGCAGAAGTAAGGGATGGCAAACCAGTTAGCAAGGATGTGATTGAGCAGATTCAGACTAGTGTGGTAGAAGAACATGGAGTTAGTGTTGCTTCTATCAAGTTGATCAAGCCTAGAACTATCAGTAAAACAACCTCAGGAAAAATCAAGAGGTTTGAATGTCTCAAAGAATTTGCAGATGAAACACTAAACTTGGTGTCACAACCTCTCTTGACAAAGAGAAAATTGGTAAGGTCATTTACTACAGGGACATGCAAAGATGGAATAACACCAAGGTCCAATCTAGTAAAAACCAATCTTGAAACACAGAGAATCAGCAACAAGGAAATTGTGGAGTTCTTAAAAAAGCTTATTTCTGAGCAGGCAGGAATCCCAGAAAGTGATATATCTGTCACAGATAACATAACATCTTATGGTGTTGATTCAATCGGTGTAGTCAAAGCAACACAAAAACTCTCAGATTTTTTGGGAATTCCAGTTGCAGCTATTGATGTCTTCACTACATCTTGCATTCAAGAGTTAGCTAACTTCTCAGAGAATCTTCTATTGAAGTCTAAGCCACAACTTGTAAGCAATCCATCAAATGCTTCAGAAGATGATATAGAGTCTGTTGAGGTGACTCTGGATGTTTCTAAGCCTCGCCAATGGGGTATTCGTTTACTTCAACTCCTGGCACTTTTTTATATTACTCTCATGTTGGTTATTCCTGCTTACATATCCATAATTGCTTTTCTAAGTCTCAATCCAAGTATCAGTGAATCAGTGGAAGGAGTTCCATGGTCAAACTACATAGTTTCTTTGACTGTGGCACCCCTTTCTTGGATCCTATGCATTGCTTCTTCTAGTTTTTGTATTTCAATTTTTGGGAATTCTTTCTTGAGGCCAAACTATGCTCTTACTCCTGAAATCTCAATTTACTCATTGGATTTTGTCAAGTGGTGGGCACTCTATAAAACTCAAGAAATTTCTTCGAGAGTCCTAGCTGTACACCTCAGAGGAACAACATTCCTGAAATATTGGTTTGAAATACTTGGTGCAAGAATTGGATCCTCAGTTTTGCTTGACACAATTGACATCACAGACCCATCTCTGGTCTCAATTGGAGATGAAGCTGTCATTGCTGAAGGGGTTTTGGTTCAAAGCCATGAGGTAAAGAACAAGATCCTAAGTTTCAATCCAATTAGGATTGGCAAATATTCTTCAGTTGGACCTTATGCTGTTATCCAAAAAGGTGCTGTAATTAAACAAGGTGCCGAGGTACAACCTTTGCAAAAGGTTGAAAAAGGACAACATGTACTCAAGCCTGCAAAGCTTAATAATGTTAAAGAGAGTGCAACAATGCTCATGACTACCAACAAAACTCAATCCAATGCTATCTACCAATTGATGGGGATTTATCTTGTTGGCTTTGTAAGCTCCCTTGCTGCAGTGATTACATACTTCACGTACACAAGACTTTTCCAAAAACCAACATCATTCCAACACTTCTCATTCATGTGCATAAGCGGGGCCTTCCATTGGATTCCTTTCACTATTATTGCTTATGCTACCATGCTTTCCGAATTCCCATCAAGTGTCATTGCATTCACCATTTCACTGGCATGTGCTTACTTGCTTCATGGTCTCATTCTCATCATTCTCACAAGTGCAAAAATTGGCAAGCATTGTTCCATTAGAGCCATCAACCCAATTTCAAACCCGGAGCTAATGGCTATTGGTAATGGTGTCCATCTTGGTGACTTTAGCCGAATAATCACTGGTTTCCATTATTCCAATGGATACACTTGTGGGAAAATAGAGGTTCAAGATAACTCAGTTGTTGGGAGTCAAAGCCTTGTTCTCCCTGGTTCTCATGTTGAAAAGAATGTCATTCTAGGAGCACTTTCAATTGCTCCAATCAATTCCATACTCCATGAAGGTAGCATGTACATTGGTTCTCAAACCAGAGTTATTACAAATAAATTGACAAGTGGTTTAGATGAACGAATAGAAGAGATGGACATGGCTTACAAGAAAGTAGTAAGCAACTTGTCTGCAAATTTAGCTACCACAACCATGAATGCTAAGGCAAGATACTTCCACAGAATTGGAGTTAGTGGTAAAGGGTACTTAAAAATGTATGACAAAATTGATGGCATTCCATTGCACAAGATTTTCCACCCTGGAAAGAGCTATCCTATCTTGATTCGGCATAGTAATAGCTTGAGTGCTGATGATGATGCAAGGATTGATGCGCGTGGTGCATCTTTGAAGATACTCTCTGATGAACTCGGTTCTAACAATGCTCTCTTTGATTTTACACTAAAGACGGGAAATGCATTTTATGCAAGAACTTTGGCTGACTTTGCAAATTGGTTTGTGTGTGGACTTGCTGCAAGGGAGGAACTAGTCAAGAAATTCCCACATATTCGTGAAGCAGTGTGGAATTCCCTTAGAAATGCTAACTCATATGCTGAATTGCATTACTACTCCAATATTTGCAGGCTAATGCGCTTCAATGATGGACAAGAAATGTATGTGAAGTTCAAGTTGAGACCCTATGACAAAAGCATTGGTGAGGACACAGGTATGGTTAAGCCAATTGGGATTCTTCCTCCAGAAACAGGTGCAATTCCCAGGGATGAAAATGATAAACGCCCTCTGCTTTTTCTTGCTGATGATTTTCAAAAGCGTGTGAGTTCACCATGTGGAGTTCATTATGTTTTCCAATTACAAGTTCGACTGGTGCCAAACGACGAATCAGCACGTGATATGGCTTTGGATTGCACAAGACCATGGGACGAAAATGAATTCCCTTACATTGATGTTGGAGAAATCAATATCACTGAGAATCTCTCTAAGGAAGAATCAGATATGATTGAGTTCAATCCTTATCTCAAAAGCCATGAGTTAGATGTTATTCCAGCTACCTCTAACTCTCAAAGTGCTACAATGGATCATGGTCGTTCATTGATCTATGAAATTTGCCAGCATGTTCGCAACAAGCGTCCGCTCCCAGAATCTTGGAGGAACCTTATTGAGCAATCCATGCTTAAGGTTGACTTATCATGTTGTCCAATGGCGGCGGCGGCAGCATCATCATTGCCTAAAAAGCTTCCACAAAAACTAACATTGACAAGAACTTGGTATCAAAATTTCTCAGCACTCTTCATTCAGCCATTTCTTCAAACAGTTTTACCACATGTTGTGATTGGTTTATCTGTTTATGCTCCCTTAAACTGCATTGTATACTTGAAGAACTTCAACAAATTTCCACTGCATTGGCTGCTTCCATTCTTTTGGGTTCTCTCAGGTGTTATGGCTGCATTGGCATGTGTTATGGCCAAATGGATTCTTGTTGGAAGAAGGAAAGTAGGTGAAACTATGCCTATATGGAGCATAAAGATCATAATGGATAGCACATGGCAAGCCATAAGAACATTGATTGGAGATTTTTTCATGGACATGGCAAGTGGTTCATTTTTATTTGTGGTTTGGATGAAGATGATGGGTGCAAACATTGACATAATGGATGATGGTGCTTATATAGATAGTAGCATGGGATCTTTGTTGAACCCTGAAATGGTGAAGATTGAGAGAGGGGGTTGTGTGGGAAGAGAAGCATTGCTGTTTGGGCACATATATGAAGGTGATGAAGGTGGAATGGTCAAGTTTGGAGAAATCAAAATTGGAGAAGATGGGTTTATTGGGAGTAGAGCTGTGGTTATGCCTGGTGTTCATGTGGAGAATGAGGGAAACCTAAGTGCATTAACACTTGCCATGAAAGGTGAAATCATTAGGTCAAGATAA 6825 0.3997 MDLKIPIDDQFSKLHPSLPLSTRIGIVGAGPSGLSAAYALCRLGYNNVTVLEKHRTVAGMCESVEIEGKIYDLGGQVLAANSAPVIFHLAKETGSELEEMDSHKLALIDPNSGKYQDVNVADDYVSVMTLTLDIQEKVKNSEHFGVHAVSQFASDLTLDYLESHGLKSLPKSVAYGYTASGFGFVQDLPYAYIHEFTRTSMAGKIRRFKCGYTSLWKKIAESLPIKLHCNTQVLGITRSSESVKVNVKTLNENETMEFDKIIVSGNFPLRYGTTYRSVPSPYTESEEEVMDATELEKELFSKVETFDYYTTVFKIKGFQHLPIGFFYFGEYMEDPSTIGNPVAMQKFYDDTDIFLFWSYGNSSDIKGPAVTELVIKAVESMGRKVEKFILQRRFKYFPHVKSQDMKSGFYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALMCKNFATSSDLPMFPYTKSLFPLQTEFQKREPRELDELPGVQFPDLPSLNSYVKHWGTNQITQNRTLYSWINEEGAVVCKRTYAELNSNASCIAHNLLTCPKPIIKAGDKVLLVYVPGLDFVDAFFGCIRAKVIPVPVLPPDPMQKSGQALLKIENIVKSCGIVAILSTKGYHSAVRAGFVKGLISLSGNDGKSSARWPNLPWIHTDSWNHKSKSLSSEYLYDQSEPQPGDICFLQFTSGSTGDAKGVMITHGGLIHNVKLMRRRYKSTSRTMLISWLPQYHDMGLIGGLFTALVSGGSAVLFSPMTFIKKPLLWLETMSKYQATHSAAPNFAFELVIRRLESNKDKLQHLDLSSMIFLMVAAEPVRQKTLKRFLELTSPIGLSQKVLAPGYGLAENCVFVSCAFGQGNPILVDWQGRICCGYIQPGDVDVDIRIVDPESGEELQEDGKEGEIWISSQSAGIGYWGKDELGQKTFQNELQNHPGRNYTRTGDLGRIIDGKLFITGRIKDLIIVAGRNIYSSDVEKTVENSSEYLRPGCCAVIGVPEDILSAKGIALPEGSDQVGLVVIAEVRDGKPVSKDVIEQIQTSVVEEHGVSVASIKLIKPRTISKTTSGKIKRFECLKEFADETLNLVSQPLLTKRKLVRSFTTGTCKDGITPRSNLVKTNLETQRISNKEIVEFLKKLISEQAGIPESDISVTDNITSYGVDSIGVVKATQKLSDFLGIPVAAIDVFTTSCIQELANFSENLLLKSKPQLVSNPSNASEDDIESVEVTLDVSKPRQWGIRLLQLLALFYITLMLVIPAYISIIAFLSLNPSISESVEGVPWSNYIVSLTVAPLSWILCIASSSFCISIFGNSFLRPNYALTPEISIYSLDFVKWWALYKTQEISSRVLAVHLRGTTFLKYWFEILGARIGSSVLLDTIDITDPSLVSIGDEAVIAEGVLVQSHEVKNKILSFNPIRIGKYSSVGPYAVIQKGAVIKQGAEVQPLQKVEKGQHVLKPAKLNNVKESATMLMTTNKTQSNAIYQLMGIYLVGFVSSLAAVITYFTYTRLFQKPTSFQHFSFMCISGAFHWIPFTIIAYATMLSEFPSSVIAFTISLACAYLLHGLILIILTSAKIGKHCSIRAINPISNPELMAIGNGVHLGDFSRIITGFHYSNGYTCGKIEVQDNSVVGSQSLVLPGSHVEKNVILGALSIAPINSILHEGSMYIGSQTRVITNKLTSGLDERIEEMDMAYKKVVSNLSANLATTTMNAKARYFHRIGVSGKGYLKMYDKIDGIPLHKIFHPGKSYPILIRHSNSLSADDDARIDARGASLKILSDELGSNNALFDFTLKTGNAFYARTLADFANWFVCGLAAREELVKKFPHIREAVWNSLRNANSYAELHYYSNICRLMRFNDGQEMYVKFKLRPYDKSIGEDTGMVKPIGILPPETGAIPRDENDKRPLLFLADDFQKRVSSPCGVHYVFQLQVRLVPNDESARDMALDCTRPWDENEFPYIDVGEINITENLSKEESDMIEFNPYLKSHELDVIPATSNSQSATMDHGRSLIYEICQHVRNKRPLPESWRNLIEQSMLKVDLSCCPMAAAAASSLPKKLPQKLTLTRTWYQNFSALFIQPFLQTVLPHVVIGLSVYAPLNCIVYLKNFNKFPLHWLLPFFWVLSGVMAALACVMAKWILVGRRKVGETMPIWSIKIIMDSTWQAIRTLIGDFFMDMASGSFLFVVWMKMMGANIDIMDDGAYIDSSMGSLLNPEMVKIERGGCVGREALLFGHIYEGDEGGMVKFGEIKIGEDGFIGSRAVVMPGVHVENEGNLSALTLAMKGEIIRSR 2274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242344g00001 2274 Pfam AMP-binding enzyme 524 958 IPR000873 -
Stsc242344g00001 2274 SMART Phosphopantetheine attachment site 1123 1194 IPR020806 GO:0031177
Stsc242344g00001 2274 SUPERFAMILY Acetyl-CoA synthetase-like 506 1083 - -
Stsc242344g00001 2274 Gene3D Catalase core domain 1667 2014 - -
Stsc242344g00001 2274 PRINTS Adrenodoxin reductase family signature 47 60 - -
Stsc242344g00001 2274 PRINTS Adrenodoxin reductase family signature 23 45 - -
Stsc242344g00001 2274 SUPERFAMILY FAD/NAD(P)-binding domain 22 272 IPR036188 -
Stsc242344g00001 2274 Gene3D - 94 202 - -
Stsc242344g00001 2274 Gene3D - 23 445 IPR036188 -
Stsc242344g00001 2274 ProSiteProfiles Carrier protein (CP) domain profile. 1120 1194 IPR009081 -
Stsc242344g00001 2274 SUPERFAMILY Trimeric LpxA-like enzymes 1343 1443 IPR011004 -
Stsc242344g00001 2274 CDD FAAL 509 1072 IPR040097 GO:0008610
Stsc242344g00001 2274 SUPERFAMILY ACP-like 1119 1203 IPR036736 -
Stsc242344g00001 2274 SUPERFAMILY Heme-dependent catalase-like 1699 2008 IPR020835 GO:0020037
Stsc242344g00001 2274 Gene3D - 303 396 - -
Stsc242344g00001 2274 SUPERFAMILY Trimeric LpxA-like enzymes 1556 1670 IPR011004 -
Stsc242344g00001 2274 Pfam Flavin containing amine oxidoreductase 32 266 IPR002937 GO:0016491
Stsc242344g00001 2274 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 132 2022 - -
Stsc242344g00001 2274 Pfam Phosphopantetheine attachment site 1125 1189 IPR009081 -
Stsc242344g00001 2274 SUPERFAMILY Trimeric LpxA-like enzymes 2121 2262 IPR011004 -
Stsc242344g00001 2274 Gene3D Hexapeptide repeat proteins 1549 1666 - -
Stsc242344g00001 2274 Gene3D Hexapeptide repeat proteins 1344 1474 - -
Stsc242344g00001 2274 ProSitePatterns Putative AMP-binding domain signature. 680 691 IPR020845 -
Stsc242344g00001 2274 Gene3D - 953 1081 IPR045851 -
Stsc242344g00001 2274 Gene3D - 1110 1193 IPR036736 -
Stsc242344g00001 2274 Gene3D - 481 952 IPR042099 -
Stsc242344g00001 2274 ProSitePatterns Phosphopantetheine attachment site. 1149 1164 IPR006162 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242344g00001 Stsc-Chr242344 15905 25921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242344g00001 645 991 Monolignol Biosynthesis Gene Families AT1G20480 26.849 4.43e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242344g00001 - - pcin:129313184 3422.1