Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242342g00007 ATGGCAAAATCAGGATGCAATTTACTTGCATTAATGAAGCTTATCTTTGTTGACACTATGTTTCTCTTAGTCCTCCTAACCATTATGAGTGTCAACATCATGGCGATGGCAGCAGCATCAAATTCGTCGTCCTTGAACGAGGAACAAAAGGCCTTGCTCCATAGCGGTGGACGGAAGGTCGCGACATCTCAAAACATTGCAACTGGACTGGTATTGTGTGCAATGAAGCTGGAAGTGTCACAGAGATTTCAACAAGGCGTTATTTTTGGTTTGGGACTCAAAGGTATCATTCCCAGTGAAATAAGCTCTGTTACAAAGCTTATGTATCTTGATCTATCCTCTAACCATCTTGAAGGTGAGTTGCCTGCTTCAATGTCAAATCTCACTCAACTTAGCTATTTTAATGTTTCAAACAATTTTCTTACTGGTGTGATCCCTTCCTCTTTTAATCACTTGAAGTATTTGAAATGTCTCTCCCTTGGTTCAAACCATATCCAAGGTCCCATCCCTATTGAACTAGGGCACTTGGTCCATCTGGAAGTTCTAGACCTTTCTCACAACAAGGTTTCTGGTGTCATACCATCTGGGTTTAGACAACTCTCTAGGCTTTCAACTTTAGATATTTCCAACAACATCCTTGAGGGATCAATTCCATCTGGTATTCTAAACCATTGCAGAGTTGTGCAACTAAGTAACAACTCTTTAAGTGGTTTCATTCCTTCTCAAATTGGCAATCTTTCTTCTCTAGACCTTAGTTATAATAACCTCTCTGGAAACATACCTGAGGGACTCCATTCTGTAGCAAACCTCAATGTGTCTTACAATTCCTTTGTTTTGGATCAGAGCTATTGTCATTTTCCAAAAGACTCCTTGATTGGTAATAAGATACCAGGTCCACCTTGCTCTTCTACTCTTGATGATGATTATCTTTCTTTACCTGTACTTATCATAATGTCAATCATCAATGGCATGTGGATTTCACTCGTTTTTGTATGTTTGGGAATTCATGTCTTTTGTCCATATGAGTACAGATACGAGGAAAAAAGAAAGAGTGGGGATATCTTCTCAATTTGGAACTTTGATGGTAAGATTGCATTTGAAGGCATAATCAAAGCAACAGAAGACTTTGATATGAGGTATTGTATTGGAACAGGTGCTTATGGAAGTGTCTACAAAGCAAAACTTCCCAGTGGCAAAAGTGTAGCACTAAAGAAACTCCACGGAATAGTATCTGAAAATCCATCATTTTACAGGAGTTTCAACAATGAGATCAAGGTCTTAAGCAAAATCCGCCACCGGAACATCATCCGGCTTCACGGATATTGTTTGCACAATAAGTGCATGTTTTTGATATATGAGTATATGGAAAAAGGAAGCTTGTTCTATAACCTAGCCATTGATGAAGAAGCCCAAGAGTTGAATTGGAACAAGAGAGTAAACATCATCAAAGGGACTGCATTTGCTCTCACTCATATGCACAATCATTGTACACCACCCATTGTCCATCGTGATGTAACCAGTACCAATGTTTTGCTGAGTTCAAATTTAGAGGCTTGTCTATCAGATTTTGGTACAGCTAAACTACTTTCTTCTGATTCATCTAATCAAACTCTCTTAGCTGGTACTCCTGGATATGTTGCTCCAGAGTTGGCTTACAGCATCAATGTAACTACAAAATGTGATGTTTATAGCTTTGGAGTTGTGACTTTGGAGATAATAATGGGGGAACATCCTAAGGAACTGCTTTCCAATATGTCAAAACTATCAGATGCAAAGATCATGCTCAAAGATATATTGGATACACGTATCCCATTGCCCTTTCTTCGAAAAGACATGAGGGATATCGTGCTGGTTGTAACATTAGCATTAGCATGCTTGCATCCCAACCCAAAATTAAGGCCTTCAATGCAGGACATAGCTAATGAGCTTTTGTTTTCAAATTCGTCATTGCTATGGCATTTTGATGGTATTTCAATTCACCAACTTGTGAACCAAGAAATATATGCAATAGGTAAAAATTAG 2022 0.3867 MAKSGCNLLALMKLIFVDTMFLLVLLTIMSVNIMAMAAASNSSSLNEEQKALLHSGGRKVATSQNIATGLVLCAMKLEVSQRFQQGVIFGLGLKGIIPSEISSVTKLMYLDLSSNHLEGELPASMSNLTQLSYFNVSNNFLTGVIPSSFNHLKYLKCLSLGSNHIQGPIPIELGHLVHLEVLDLSHNKVSGVIPSGFRQLSRLSTLDISNNILEGSIPSGILNHCRVVQLSNNSLSGFIPSQIGNLSSLDLSYNNLSGNIPEGLHSVANLNVSYNSFVLDQSYCHFPKDSLIGNKIPGPPCSSTLDDDYLSLPVLIIMSIINGMWISLVFVCLGIHVFCPYEYRYEEKRKSGDIFSIWNFDGKIAFEGIIKATEDFDMRYCIGTGAYGSVYKAKLPSGKSVALKKLHGIVSENPSFYRSFNNEIKVLSKIRHRNIIRLHGYCLHNKCMFLIYEYMEKGSLFYNLAIDEEAQELNWNKRVNIIKGTAFALTHMHNHCTPPIVHRDVTSTNVLLSSNLEACLSDFGTAKLLSSDSSNQTLLAGTPGYVAPELAYSINVTTKCDVYSFGVVTLEIIMGEHPKELLSNMSKLSDAKIMLKDILDTRIPLPFLRKDMRDIVLVVTLALACLHPNPKLRPSMQDIANELLFSNSSLLWHFDGISIHQLVNQEIYAIGKN 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242342g00007 673 ProSiteProfiles Protein kinase domain profile. 376 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242342g00007 673 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515
Stsc242342g00007 673 Gene3D Ribonuclease Inhibitor 89 305 IPR032675 -
Stsc242342g00007 673 SMART LRR_typ_2 104 127 IPR003591 -
Stsc242342g00007 673 SMART LRR_typ_2 128 151 IPR003591 -
Stsc242342g00007 673 SMART LRR_typ_2 200 224 IPR003591 -
Stsc242342g00007 673 SMART LRR_typ_2 176 199 IPR003591 -
Stsc242342g00007 673 SMART LRR_typ_2 243 266 IPR003591 -
Stsc242342g00007 673 Pfam Leucine rich repeat 130 188 IPR001611 GO:0005515
Stsc242342g00007 673 ProSitePatterns Tyrosine protein kinases specific active-site signature. 500 512 IPR008266 GO:0004672|GO:0006468
Stsc242342g00007 673 Gene3D Phosphorylase Kinase; domain 1 342 454 - -
Stsc242342g00007 673 FunFam Leucine-rich repeat receptor-like protein kinase 455 651 - -
Stsc242342g00007 673 PANTHER LEUCINE RICH REPEAT KINASE 2 94 644 - -
Stsc242342g00007 673 Pfam Protein kinase domain 382 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242342g00007 673 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 150 239 - -
Stsc242342g00007 673 ProSiteProfiles Leucine-rich repeat profile. 245 267 IPR001611 GO:0005515
Stsc242342g00007 673 Gene3D Transferase(Phosphotransferase) domain 1 455 650 - -
Stsc242342g00007 673 FunFam Leucine-rich repeat receptor protein kinase MSP1 341 454 - -
Stsc242342g00007 673 PRINTS Leucine-rich repeat signature 176 189 - -
Stsc242342g00007 673 PRINTS Leucine-rich repeat signature 107 120 - -
Stsc242342g00007 673 SUPERFAMILY L domain-like 92 277 - -
Stsc242342g00007 673 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Stsc242342g00007 673 SUPERFAMILY Protein kinase-like (PK-like) 360 646 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242342g00007 Stsc-Chr242342 23428 25609 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242342g00007 78 548 Receptor kinase-like Gene Family AT4G08850 42.387 1.93e-103 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc242342g00007 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242342g00007 - - vra:106773464 770.77