Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242342g00006 ATGCTTATACCCACTTCCATTTTGATATCATTCCTTCTTCTCTTTCCCATCACTGAAGCCAAAGTGTCACAGTTAGATGAAGAAGCTCATGCTTTGCTTTTGACTGCTTGGTGGAGTAACCAACACAATATCTCAAACCGTTGCAACTGGCCTGGTATTCGCTGCAACAATGCTGGAAGCATCACAGAGATTACTTCACCACCAAGGAAGAATTACGACACCAACAATAGCTCGAAAGACATCGATTTTTCAGTCTTTTCGAATCTTGTCCACCTTGATCTCAGTGGTATGCAGTTGTATGGATTCCCAAAGGGACTAAGTGGTCTCAAGAAACTGGAATTTCTGAACCTATCTCATAACAACCTTAAAGATGAACCAGGTTTTCTTTCTTCATTGGCAAATCTAACTCAACTTCTTGTGCTTGATCTTTCTTACAATTACATTGGTGGTCAAATTCCAAATGAATTCAGCATGCTAGAGAGGCTTGTCACATTGAATTTGAGTACAAACTTGTTCAGTGGAACCATTCCATTAGTCTTGAGTCATATGTCCAATCTCATCTACATGAACCTTTCTAGCAATCAACTAATTGGTGACCTTCCTACTACACTATTTACAAATCTCTCCAACTTAGAGACTCTTGACCTTTCCCTAAATAGATTTAGTGGTCTCATCCCTCAAGAAATAGGGAATTTGACAAACTTGTTAACCTTAGACCTCAGTTTAAACAACTTTGTTGGTCCAATTCCTGACCAAGTTGGGTACTTGAACCGTTTGACAACTCTCAACCTTGATTCAAATTCCATTAATGGTTCTATACCTTCAAGTATAGGACTTTTATCCCATTTGGAAGTGTTGAATATCAAAGACAACCAAGTAGGTGGATTTATCCCAAATGAATTAGAACACTTGGTTCATCTTAAAGCTTTAGATCTTTCATATAATGGAATTTTGGGTGTTATACCAAAATGGATATCTAACCTGACACAATTAGATGATATAAGACTTTCAGGGAATCAAATTAGTGGTTATATCCCATCCACTATACTTGTTCATATCAGTCATGTGGATCTCAGCACAAACAAGTTAATTGGGAACGTTCCTTTTCAGATTAGCAATGTTTCATATCTAGATGTTAGTTACAACAACCTTGCTGGTCCAATTCCTGAGCAAATAGGGTACTCGAATCAGTTGACAGTTCTCCACCTTGATTCAAATTTCTTCAATGGTTCTATACCTTCAAGTATAGGACTTCTAGCCCAAATAGAAATGCTCACCATGGGACATAACAAGATAGATGGTTGTATCCCTATAGAAATGGAGCATTTGTTCCATTTAAAAGGTTTGGATCTTTCTTGGAATAGATTTTCTGGTGTTATCCCATCCGGTCTCTTTGTTCACCCTACGCTTGTGGATCTGAGCATTAACAATTTAAGTGGAAGCATTCCTTCAATAATTGGCAAAAATCTTTCACTTTTAGACCTCAGTTACAACAATTTCAGTGGCAACATACCTAAGGGGCTAGATTCAGTGCAATCCTACAATTTAGAGTGCAATCCGTTTCTAAATGGAGATTACCACTATTGTCAAACACAACAAAATCAATCAGAATACCATAAGAATAATCATAATAAAGGTTTAAGCACTTTGGTTTGGGTTTTGATAATTGTGGCCAGTGTTCTTTTTTCTTTTGGCTCCATAGGAATTGGAATTTGTGTTCTATTTGCCAGGCATAGCCGTCGAAAACTTAAGGTTATGACAGAAAAGCATGGAGACTTGTTTTCAATTTGGAACTATGATGGTAAAATTGCATTTGAGGACATTGTTGAAGCTACAGAGGACTTCCATATCAGATATTGCACTGGAACTGGTGCTTATGGTAGTGTCTACAAAGCAGAACTTCCAAGCGGCAAAACCATTGCATTGAAGAAGCTTCACAAAACAGAATCTGAAAATCCCTCTTTTTACAAGAGCTTCTGCAATGAAGTTAAGGTCTTGACAGAGATTCGCCACCGCAACATCATAAAGCTTTATGGCTATTGTATGCATAACAGATGCATGTTTCTGGTGTATGAATAA 2079 0.3761 MLIPTSILISFLLLFPITEAKVSQLDEEAHALLLTAWWSNQHNISNRCNWPGIRCNNAGSITEITSPPRKNYDTNNSSKDIDFSVFSNLVHLDLSGMQLYGFPKGLSGLKKLEFLNLSHNNLKDEPGFLSSLANLTQLLVLDLSYNYIGGQIPNEFSMLERLVTLNLSTNLFSGTIPLVLSHMSNLIYMNLSSNQLIGDLPTTLFTNLSNLETLDLSLNRFSGLIPQEIGNLTNLLTLDLSLNNFVGPIPDQVGYLNRLTTLNLDSNSINGSIPSSIGLLSHLEVLNIKDNQVGGFIPNELEHLVHLKALDLSYNGILGVIPKWISNLTQLDDIRLSGNQISGYIPSTILVHISHVDLSTNKLIGNVPFQISNVSYLDVSYNNLAGPIPEQIGYSNQLTVLHLDSNFFNGSIPSSIGLLAQIEMLTMGHNKIDGCIPIEMEHLFHLKGLDLSWNRFSGVIPSGLFVHPTLVDLSINNLSGSIPSIIGKNLSLLDLSYNNFSGNIPKGLDSVQSYNLECNPFLNGDYHYCQTQQNQSEYHKNNHNKGLSTLVWVLIIVASVLFSFGSIGIGICVLFARHSRRKLKVMTEKHGDLFSIWNYDGKIAFEDIVEATEDFHIRYCTGTGAYGSVYKAELPSGKTIALKKLHKTESENPSFYKSFCNEVKVLTEIRHRNIIKLYGYCMHNRCMFLVYE 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242342g00006 692 FunFam Leucine-rich repeat receptor protein kinase EMS1 369 462 - -
Stsc242342g00006 692 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Stsc242342g00006 692 Pfam Leucine rich repeat 258 317 IPR001611 GO:0005515
Stsc242342g00006 692 ProSiteProfiles Leucine-rich repeat profile. 258 280 IPR001611 GO:0005515
Stsc242342g00006 692 SUPERFAMILY L domain-like 44 368 - -
Stsc242342g00006 692 Gene3D Ribonuclease Inhibitor 369 465 IPR032675 -
Stsc242342g00006 692 FunFam Leucine-rich repeat receptor protein kinase MSP1 578 692 - -
Stsc242342g00006 692 ProSiteProfiles Protein kinase domain profile. 615 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242342g00006 692 Gene3D Ribonuclease Inhibitor 130 207 IPR032675 -
Stsc242342g00006 692 ProSiteProfiles Leucine-rich repeat profile. 111 132 IPR001611 GO:0005515
Stsc242342g00006 692 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 126 355 - -
Stsc242342g00006 692 Pfam Leucine Rich repeat 111 125 IPR001611 GO:0005515
Stsc242342g00006 692 Gene3D Ribonuclease Inhibitor 208 279 IPR032675 -
Stsc242342g00006 692 Gene3D Ribonuclease Inhibitor 280 368 IPR032675 -
Stsc242342g00006 692 SUPERFAMILY Protein kinase-like (PK-like) 594 692 IPR011009 -
Stsc242342g00006 692 Gene3D Phosphorylase Kinase; domain 1 576 692 - -
Stsc242342g00006 692 SMART LRR_typ_2 443 467 IPR003591 -
Stsc242342g00006 692 SMART LRR_typ_2 109 132 IPR003591 -
Stsc242342g00006 692 SMART LRR_typ_2 208 231 IPR003591 -
Stsc242342g00006 692 SMART LRR_typ_2 304 327 IPR003591 -
Stsc242342g00006 692 SMART LRR_typ_2 135 158 IPR003591 -
Stsc242342g00006 692 SMART LRR_typ_2 183 207 IPR003591 -
Stsc242342g00006 692 SMART LRR_typ_2 86 108 IPR003591 -
Stsc242342g00006 692 SMART LRR_typ_2 328 352 IPR003591 -
Stsc242342g00006 692 SMART LRR_typ_2 256 280 IPR003591 -
Stsc242342g00006 692 Gene3D Ribonuclease Inhibitor 466 522 IPR032675 -
Stsc242342g00006 692 Gene3D Ribonuclease Inhibitor 21 129 IPR032675 -
Stsc242342g00006 692 SUPERFAMILY L domain-like 352 522 - -
Stsc242342g00006 692 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 291 692 - -
Stsc242342g00006 692 Pfam Protein kinase domain 622 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242342g00006 Stsc-Chr242342 20229 22307 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242342g00006 22 692 Receptor kinase-like Gene Family AT4G08850 30.976 1.35e-90 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc242342g00006 Pkinase 1.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242342g00006 - - adu:107475518 1078.54