Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242342g00005 ATGTTTTTGGTGTATGAATACTTGGGAAGAGGAAGCTTGTTCTATAACTTGGCCAATGATGTGAAAGCTAAAAGGCTAAACTGGAACAAGAGCGTAAATATCATCAAAGGGGCAGCATATGCTCTTGATTACTTGCATCATCACTGTCCTTCTCCTATTGTTCATCGAGATGTCAGCAGTAACAACATTCTGCTGAATTCAGAGTTAGAAGCTTGTGTCTCAGATTTCGGCACAGCTAGACTTCTCGATCCTGATTCATCTAACCAAACTCTTCTAGTTGGTACTTATGGATATCTTGCTCCAGAATTGGCATACACCATGAGTGTGACTACAAAATGTGATGTGTATAGCTTTGGAGTGGTGGCTTTAGAAACAATGATGGGTCATCACCCAGGAGAATTCATTACCACTATGTCAAAGCCATGTACTCAACAATTATTGATGAAAGATTTGTTGGATCCACGGATTCCACCTCCAACTTGTGGAGAAGATATGCAAGATGTTTTGCTTGTTGTAAAGCAAGCATTAGCATGCCTCTCCTCTGACCCAAAATCAAGACCATCAATGGAGGATGTGGCTAATCAGTTTTCAGATTCCAAGGCTTCAATGAATTCTTCTTTTCCTGATGTCTCAATCTACCAATTGATGAATCAAGAAATATATCCCATTGATAAAAAATATATCCCATTGATGTCTCAATCTCTCGTTTTTTATCTTCCAAGCATAGATTCCTAA 735 0.3891 MFLVYEYLGRGSLFYNLANDVKAKRLNWNKSVNIIKGAAYALDYLHHHCPSPIVHRDVSSNNILLNSELEACVSDFGTARLLDPDSSNQTLLVGTYGYLAPELAYTMSVTTKCDVYSFGVVALETMMGHHPGEFITTMSKPCTQQLLMKDLLDPRIPPPTCGEDMQDVLLVVKQALACLSSDPKSRPSMEDVANQFSDSKASMNSSFPDVSIYQLMNQEIYPIDKKYIPLMSQSLVFYLPSIDS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242342g00005 244 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242342g00005 244 PIRSF ILK 1 207 - -
Stsc242342g00005 244 ProSitePatterns Tyrosine protein kinases specific active-site signature. 53 65 IPR008266 GO:0004672|GO:0006468
Stsc242342g00005 244 FunFam MDIS1-interacting receptor like kinase 2 8 202 - -
Stsc242342g00005 244 Gene3D Transferase(Phosphotransferase) domain 1 1 222 - -
Stsc242342g00005 244 Pfam Protein kinase domain 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242342g00005 244 PANTHER LEUCINE RICH REPEAT KINASE 2 1 205 - -
Stsc242342g00005 244 SUPERFAMILY Protein kinase-like (PK-like) 2 194 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242342g00005 Stsc-Chr242342 12944 13764 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242342g00005 2 206 Receptor kinase-like Gene Family AT1G72180 37.037 4.14e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc242342g00005 Pkinase 2.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242342g00005 - - ahf:112730549 371.318