Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242342g00003 ATGAAGCTGGAAGTGTCAAGAGAGATTTCAACAAGCCGTTATTTTGATATCCCTCCATCTGAATTGAGGAACTTCAATTTTACTGCATTCCCCAATTTGACCCGTCTAGAACTTAGTGGCTTGGAACTCGAGGGAACCATTCCCAGCGAAATAAGCACTCTTACAAAGCTTATGTACCTTGATCTCTCCTCTAACTATCTTGAAGGTGTTATTCCTTCCACTTTGGGCCAGTTGAAGTGTTTGGTTCAACTTTCTCTTGACTCAAACAATCTTGAAGGCCCCATTCCTAAGGGCCTAGGGTATTTAAAGCATTTAGAGCAGTTAACCCTTTCAAATAACTCACTGAATGGTTCAATCCCTTCTACCTTTGGACAACTTGAATATTTGGAATCCCTGTCCCTTGATTCAAACAATATTGACGGTCCCATCCCTATAGAATTTGAGAACCTGGTACATTTGAAAGCTTTAGACCTTTCCCATAACAAGGTTTCTGGTGTCATACCATATGGGATTGGACAGCTCCCTAAGCTTTCAACTTTAGATATATCCAACAATGGCCTTGAGGGACCAATTCCATTTGGTATTCTAAACCATTGCAGTTTTGTGCAGCTAAGTAACAATTTTTTAAGTGGACATATTCCCTCTCAAATTGGCAATCTTTCTTATCTGGACCTTAGTAATAATAGCCTCTCAGGAAGCATACCGGAGGGACTCCATTCTGTTCAATATCTCAATATGTCTTACAATTCCTTTGTTCCAGATATGCACTTTTGTGGTTTTCCAAGCACTGATTGTGTCTTCTGTCCCCTCCAACGAGAGCATGGATTTGAGGAAGGAAGAAAGAACGGAGATTTGTTCTCAATTTGGAACTTTGATGGTAAGATTGCATTTAAAGACATAATTAAAGCCACAGAAGACTTTGATATAAGGTATTGCATTGGAACAGGTGCTTATGGAAGTGTCTACAAAGCACAGCTTCCTAGTGGCAGAATTGTGGCACTAAAGAAGCTTCACAATAGAGAGTCTGAAAATCCATCATTTTACAAGAGTTTTAGCAATGAGGTCAAGATCTTGACAGAAATTCGCCACCGGAACATCATTAGGCTTTATGCCATTGATGAAGAAGCTCAAGAATTGAATTGGAACAAGAGAGTAAACATCATCAAAGGGACTGCATTTGCTCTCAATCATATGCACCATCATTGTACACCACCTATTGTCCATCGTGATGTAACCAGTACCAATGTTTTGCTGAGTTCAAATTTAGAGGCTTGCCTATCAGATTTTGGTACAGCTAAAATACTTTCTTCTGATTCATCTAATCAAACTCTATTAGCTGGCACTCCCGGATATATTGCTCCAGAGTTGGCTTACAGCACCAGTGTAACTACAAAATGTGATGTTTATAGCTTTGGAGTGGTGACTTTGGAGACAATAATGGGGGAACATCCTAAGGAACTGCTTTCCGATATGTCAAAACCATCTGCTCCAAAGATCATGCTCAAAGATATATTGGATTCACGTATCCCATTGCCCTTTCTTCGAAAAGACATGAGGGATATTATGCTGGTTGTGACATTAGCATTAGCATGCTTGCATCCCAACCCAAAATTAAGACCTTCAATGCAGGACATAGCTAATGAGCTTTTGTTTTCAAAGTCGCCATTGCTATGGCATTTTGATGGTATTTCAATTCACCAACTTGTGAACCAAGAAATATATGCAATAGGTAAAAATTAG 1740 0.3948 MKLEVSREISTSRYFDIPPSELRNFNFTAFPNLTRLELSGLELEGTIPSEISTLTKLMYLDLSSNYLEGVIPSTLGQLKCLVQLSLDSNNLEGPIPKGLGYLKHLEQLTLSNNSLNGSIPSTFGQLEYLESLSLDSNNIDGPIPIEFENLVHLKALDLSHNKVSGVIPYGIGQLPKLSTLDISNNGLEGPIPFGILNHCSFVQLSNNFLSGHIPSQIGNLSYLDLSNNSLSGSIPEGLHSVQYLNMSYNSFVPDMHFCGFPSTDCVFCPLQREHGFEEGRKNGDLFSIWNFDGKIAFKDIIKATEDFDIRYCIGTGAYGSVYKAQLPSGRIVALKKLHNRESENPSFYKSFSNEVKILTEIRHRNIIRLYAIDEEAQELNWNKRVNIIKGTAFALNHMHHHCTPPIVHRDVTSTNVLLSSNLEACLSDFGTAKILSSDSSNQTLLAGTPGYIAPELAYSTSVTTKCDVYSFGVVTLETIMGEHPKELLSDMSKPSAPKIMLKDILDSRIPLPFLRKDMRDIMLVVTLALACLHPNPKLRPSMQDIANELLFSKSPLLWHFDGISIHQLVNQEIYAIGKN 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242342g00003 579 Pfam Protein kinase domain 383 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242342g00003 579 Pfam Protein kinase domain 312 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242342g00003 579 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Stsc242342g00003 579 PRINTS Leucine-rich repeat signature 153 166 - -
Stsc242342g00003 579 PRINTS Leucine-rich repeat signature 217 230 - -
Stsc242342g00003 579 SMART LRR_typ_2 54 77 IPR003591 -
Stsc242342g00003 579 SMART LRR_typ_2 174 198 IPR003591 -
Stsc242342g00003 579 SMART LRR_typ_2 102 126 IPR003591 -
Stsc242342g00003 579 SMART LRR_typ_2 150 173 IPR003591 -
Stsc242342g00003 579 SMART LRR_typ_2 217 240 IPR003591 -
Stsc242342g00003 579 Pfam Leucine rich repeat 31 91 IPR001611 GO:0005515
Stsc242342g00003 579 Pfam Leucine rich repeat 129 187 IPR001611 GO:0005515
Stsc242342g00003 579 Gene3D Phosphorylase Kinase; domain 1 277 376 - -
Stsc242342g00003 579 ProSiteProfiles Protein kinase domain profile. 307 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242342g00003 579 SUPERFAMILY Protein kinase-like (PK-like) 291 552 IPR011009 -
Stsc242342g00003 579 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Stsc242342g00003 579 Gene3D Ribonuclease Inhibitor 9 265 IPR032675 -
Stsc242342g00003 579 Gene3D Transferase(Phosphotransferase) domain 1 377 561 - -
Stsc242342g00003 579 SUPERFAMILY L domain-like 19 252 - -
Stsc242342g00003 579 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 121 213 - -
Stsc242342g00003 579 FunFam Leucine-rich repeat receptor protein kinase MSP1 271 379 - -
Stsc242342g00003 579 PANTHER LEUCINE RICH REPEAT KINASE 2 193 552 - -
Stsc242342g00003 579 FunFam Piriformospora indica-insensitive protein 2 24 120 - -
Stsc242342g00003 579 ProSitePatterns Tyrosine protein kinases specific active-site signature. 406 418 IPR008266 GO:0004672|GO:0006468
Stsc242342g00003 579 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242342g00003 Stsc-Chr242342 7864 9928 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242342g00003 27 454 Receptor kinase-like Gene Family AT4G08850 35.317 5.52e-84 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc242342g00003 Pkinase 2.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242342g00003 - - ahf:112795089 791.186