Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242342g00001 ATGCTGAAAAATGTAAGAGAAGAATCACAAAAGTTTGGTGTGGCTTCTTTGCGTGATAAACTTGTTAACGGGTTATTGCCCAGAAAAAGCCTTGTTGTGGAAGGATCATCCAACACAAGATCCACTTTTTATGAGGCAAAGTTAAGTAAAAAAAAAATTTTCATAGTGCTTGATGATATGGATAAATTTGAGCAGTTTGAACATCTTGCTACACAATGGTCGGGACCAGGTAGCAGGATCATTATAACGGCCAGAGACAACAATGTCCTTAGAAAGGTTCATGGAATATATGAGGTTCAGGGTTTGAGCTTCAAAGATTCTTCTAGGCTTTTTTGCTTGAATGCTTTTGACAAAATCCATCCTGAAGCTGGATATGAAGAGATTTCGAAAATGGCAGTCAGTTATGCAAATGGTATCCCATTGGCGTTAAAAGTTCTGGGTCGTTTTTTATATTCTAAAACTAGAGAACAATGGGAAAGTGCTTTGGAAAAACTCAAGATTTATCCTGATACAGAAATTTTTAATGTCTTAAAGTTGAATTACGATGGACTAGATGATTTGGAGAGCGAAATATTCCTTGAAATTGCATTTTTTTACAAAGGAAAAGATAAGTATGTTATCATACAATTTCTAGAATTGTGTGGCTTTTTCCCTGATATTGGCATAGATAATCCTTCGCGCAGAGCTCTTATAACCATTTCAGATGATGATAATATAGGAATCCATGACTTGATAGAACAAATGGGTCGAGAAATAGTTCGTCAAGAATCAACGAAAGACCCAGGAAGACGTAGCCGCCTAAGTAACCTCGAGGAGGTCTACGATGTATTGAATAATAATAAGGGAACAGACTCAGTTGAAGGCATTATATTAGACTTGTCTCAATTGAAGAGAGATCTACATTTAGATGTTGACACTTTCAAAAAGATGCCTAATATAAGCCAAGTTTCTAAACTTTGGGATGGAGTTCAGGATCTTGTAAATTTGAGGAGGATTAACCTTAAGGGATGCAAGCAACTAGTGGAGCTTCCAGATTTTACTAAAGCATCAAACCTTAAAAAAATAGACCTCATGGGATGTGAAAGTTTGTGTGAGCTTCCTCCATCCATTTTATCCATCCACAAGCTTCAAATCTTGGATCTTGAAAACTGCAAAGCACTAAAGAGTCTTAAAAGCAATATTCATTTCAAATCTCTTAAATGGCTCAGCGTTCTTGGCTGCTCAAGCTTGAAGGAATTTTCAGTGTCATCAGAGCAATTAACAATGTTGGAACTTCATGAGACAATAATTGATAAGTTGCACCCGTCAGTTGGCTATTTCAGCAAACTTAAAGAGCTTAAGCTCACAAATCTGAAGCTTAAAGCTCTTCCAGACGAACTGTGTCACTTAGTATCTCTTGAGAAACTAGATCTTTATGGATGTGAACAGTTGGTTGAACTCCCTCGTAACATGAAAGCCTTATCACGGTTACAGGATCTCGACATAATGGATTGCTGCAATCTTGGATCTTTGCCAGAGCTTCCACCATCCATTATTCATTTCTCTGCCACAAACTGCACATCACTCGAGAAATTATTCAACGCGAAGGCAGTGTTAAGTTTAAATCTAGTGACCATCTCCTTTGAAAACTGCGTGAGGCTTGAAGATGATTCATTCTTAGAATATGTGCATCATCCAATGATGGGAGTAGCAATGAGAGCGATGACGGGTGGGACGCTACAATATAAATATACTGGTTCCCATGAGGATGATGTGCGGGACTATGTTCCCGGCTCTGACCGCAAAAACCATGTTTTTTTTCCCGGAAGCAAGGTTCCACCATGGTTCAAATATCAGACAAGAGAGAGTTCAGTAAGCTTTGACCTTTTTGCAGATAAACCTTGTTATATCCATACGCTAGTGGGTTTCATTTTGTGCTGTGTTGTTCATTATGTTGGCCCTTCTCAAACAAGGACTACTCGTGTTCCTTTCGATAAATGGCCTCCCGTGGTCGAGTGTGGATGCGATTTATGGCGTAGGCAAAAGGTTACTACTACGAGTAGATTGAGCTCAGATCATGTTTGTATATGGTTTGAAGGAGTTGGTAGTAAGCATCAATTGCGTGACAAGAATGTTACTTTTAAATTCGAAGCTAATTCTGTAATCAAATATCATGTCTATACACGCGCTTGGTATGATGAATGTGAGTTTCAAGAATGGGAGGTGATAGGGTGCGGGGTTTGTCCAGTATATGCCTCAGACATCTTCCATGTCTTTCAAAATGTGGATCCCCAGTTCCACTTCTTCTATGATAAACGCAGCCACCCTTGGCAACGTGGTGTTAAGCAAACGGTTTTCACTGTAGAAGAAGAAAAATTATGGTCGAGACGCTCTTATCCCTTTTATTGGATTCGGAGAAAAGGAGAGGTTTTGTTTGAAGATTCTGATTCCCTCGATGATGAGTTATCCGCTGAGCAATTTAAGGAAATGGTAATGATGTTGTTTGAAGATTCTGTTTCCCTCAATGAGGTCTCCCTTGAGCAAATGTTCATGAAGATGTTTGAAATATCTGAGTCCCCCGATTATATGAACTCGGTTGAGCAAATGAAGCAATCGGTAAATATGGATTTTGAATGTTCTGATTGCCTCCATGAGGTCTCCGTTGAGCAATTTTTAATGATGTATGAATACTCCCTCTCCCTCCCTGATGAGATCTCCGTTGAGCAGGATACCGATAATATGAATCAAATGTCAAGGATTTCATCGGGATCAGAGGAAGTACCTCAGAGCTTGGATGAACAAGAGAACCAGAGCGTTCAAAGTAACAATTCTCCTCGGTCACCTTCATGGCAGCGCTTCGCCCACACGGAAGGACCCGAGTCTAGTATAGCCTCAGCCCAGCAACCCAAGCCCACCCAATCTCAACACCACCATCATCTTCAAGCTCATCCATGGCAGCTCTGTATCTTCCTCCTTCGCGCCTTCTATCTCGCCCTCCACCACTGCGCCACTGGAGCTGCTGCTGCGACAGGGAATCTGCGGCGACTCTGA 3030 0.4066 MLKNVREESQKFGVASLRDKLVNGLLPRKSLVVEGSSNTRSTFYEAKLSKKKIFIVLDDMDKFEQFEHLATQWSGPGSRIIITARDNNVLRKVHGIYEVQGLSFKDSSRLFCLNAFDKIHPEAGYEEISKMAVSYANGIPLALKVLGRFLYSKTREQWESALEKLKIYPDTEIFNVLKLNYDGLDDLESEIFLEIAFFYKGKDKYVIIQFLELCGFFPDIGIDNPSRRALITISDDDNIGIHDLIEQMGREIVRQESTKDPGRRSRLSNLEEVYDVLNNNKGTDSVEGIILDLSQLKRDLHLDVDTFKKMPNISQVSKLWDGVQDLVNLRRINLKGCKQLVELPDFTKASNLKKIDLMGCESLCELPPSILSIHKLQILDLENCKALKSLKSNIHFKSLKWLSVLGCSSLKEFSVSSEQLTMLELHETIIDKLHPSVGYFSKLKELKLTNLKLKALPDELCHLVSLEKLDLYGCEQLVELPRNMKALSRLQDLDIMDCCNLGSLPELPPSIIHFSATNCTSLEKLFNAKAVLSLNLVTISFENCVRLEDDSFLEYVHHPMMGVAMRAMTGGTLQYKYTGSHEDDVRDYVPGSDRKNHVFFPGSKVPPWFKYQTRESSVSFDLFADKPCYIHTLVGFILCCVVHYVGPSQTRTTRVPFDKWPPVVECGCDLWRRQKVTTTSRLSSDHVCIWFEGVGSKHQLRDKNVTFKFEANSVIKYHVYTRAWYDECEFQEWEVIGCGVCPVYASDIFHVFQNVDPQFHFFYDKRSHPWQRGVKQTVFTVEEEKLWSRRSYPFYWIRRKGEVLFEDSDSLDDELSAEQFKEMVMMLFEDSVSLNEVSLEQMFMKMFEISESPDYMNSVEQMKQSVNMDFECSDCLHEVSVEQFLMMYEYSLSLPDEISVEQDTDNMNQMSRISSGSEEVPQSLDEQENQSVQSNNSPRSPSWQRFAHTEGPESSIASAQQPKPTQSQHHHHLQAHPWQLCIFLLRAFYLALHHCATGAAAATGNLRRL 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242342g00001 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 193 IPR027417 -
Stsc242342g00001 1009 Pfam NB-ARC domain 9 166 IPR002182 GO:0043531
Stsc242342g00001 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 398 547 IPR044974 GO:0006952
Stsc242342g00001 1009 Gene3D - 102 185 IPR042197 -
Stsc242342g00001 1009 Gene3D Ribonuclease Inhibitor 241 412 IPR032675 -
Stsc242342g00001 1009 Gene3D Ribonuclease Inhibitor 413 556 IPR032675 -
Stsc242342g00001 1009 PRINTS Disease resistance protein signature 136 150 - -
Stsc242342g00001 1009 PRINTS Disease resistance protein signature 371 387 - -
Stsc242342g00001 1009 PRINTS Disease resistance protein signature 47 61 - -
Stsc242342g00001 1009 MobiDBLite consensus disorder prediction 912 971 - -
Stsc242342g00001 1009 Pfam C-JID domain 600 748 IPR045344 -
Stsc242342g00001 1009 Gene3D - 1 98 IPR027417 -
Stsc242342g00001 1009 SUPERFAMILY L domain-like 241 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242342g00001 Stsc-Chr242342 324 4095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242342g00001 39 566 WRKY Transcription Factor Family AT5G45050 29.936 1.37e-56 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242342g00001 - - ahf:112728432 927.546