Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242332g00003 ATGCAACTTCTGAAGATACATGATGCACATGAAATTTACAATGTTGAAGGGTTGGCAGAAAATGAAGCCTTTGACCTCTTTCGTTTGAAGGCTTTTAAGCAACGAAAGCCTGAAGAAGAGTATTTGGATTTATCCAATCAGGTGGTCAAATATTGTGCTGGTCTTCCATTGGCACTTGAGGTATTGGGTTCCCATCTTTATGGTAGATCTATTAAAGATTGGCATAGTGCTTTTGGAAAATTGAACAGCTTTCCACATGTCGACATTTTTGAGACATTGAAAATAAGTTATGATGGCTTAGATTCCATGGACAAGGATATTTTTTTAGACATTGCTTATTTTTTCAAAGGAAGTCTTAAAGAGTATGTAATAAATATATTAGAAAGACGTGGTTATCATGTTGAAATTGGTATCACTACTTTGATCGATAGATCTCTACTCACTATAAATAACAAAGATTCAGGTGAGATTTTGGAGATGCATGATTTGCTTGAAGAAATGGGTAAACATATTGTAATTCAAGAATCTCCAGATGATCCTAGTAAGCGCAGCAGGTTGCGGTGTTACGAGGACATCGATCTTGTTCTTACTCAAAACAAGGGAACTGAAGCAACTCATAGCATCATTTTGCCCAATTTTTTCTATGAAAAACAATGTGCAGTGCGTTGGAGAGATTTAACCTTCTCAAATATATCTCAGCTAAAGGTCCTCATTCTAAATGGTTTTAATGTTCCCATTGTTAGCTATATTCCTTGTTCATTAAGAGTTTTGCATTGGACAAATTGTCCAATGGAAACTCTGCCATTTATAGATCAATACTATGAACTTGTTGAGATTGATCTAGGAAATAGCTCCAACATTGTACAATTTTTGGAAAAGCTGAAGTTCTTATGGTTGGGTAATTGCTCTCGGCTAAAACAATTTCCAGATCTTTCTGAAGCTCCCAAGCTTGAAGTACTTTGCTTTCAAGGTTGTGATGAACTGAATGACTTTCCCTCATATCTCACACGCCACAAGAGCCTAGTTAAACTTATTTTAAAGAATTGCTCAAGTCTTGAAACTCTTGGTTGTAAATTGGAGATGAGTTCCCTCAAGGAACTAGATCTTGGTGGCTGCAAAAGTTTGAGGAAACTTCCAGAATTTTGA 1146 0.3613 MQLLKIHDAHEIYNVEGLAENEAFDLFRLKAFKQRKPEEEYLDLSNQVVKYCAGLPLALEVLGSHLYGRSIKDWHSAFGKLNSFPHVDIFETLKISYDGLDSMDKDIFLDIAYFFKGSLKEYVINILERRGYHVEIGITTLIDRSLLTINNKDSGEILEMHDLLEEMGKHIVIQESPDDPSKRSRLRCYEDIDLVLTQNKGTEATHSIILPNFFYEKQCAVRWRDLTFSNISQLKVLILNGFNVPIVSYIPCSLRVLHWTNCPMETLPFIDQYYELVEIDLGNSSNIVQFLEKLKFLWLGNCSRLKQFPDLSEAPKLEVLCFQGCDELNDFPSYLTRHKSLVKLILKNCSSLETLGCKLEMSSLKELDLGGCKSLRKLPEF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242332g00003 381 Gene3D Ribonuclease Inhibitor 214 381 IPR032675 -
Stsc242332g00003 381 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 380 IPR044974 GO:0006952
Stsc242332g00003 381 SUPERFAMILY L domain-like 181 380 - -
Stsc242332g00003 381 Gene3D - 17 101 IPR042197 -
Stsc242332g00003 381 PRINTS Disease resistance protein signature 359 375 - -
Stsc242332g00003 381 PRINTS Disease resistance protein signature 52 66 - -
Stsc242332g00003 381 Pfam NB-ARC domain 9 98 IPR002182 GO:0043531
Stsc242332g00003 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 111 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242332g00003 Stsc-Chr242332 27747 29154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242332g00003 3 381 WRKY Transcription Factor Family AT5G45050 29.557 1.06e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242332g00003 - - ahf:112769348 527.324