Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242326g00002 ATGTCCGGCACCAGGGCACCTCCTGCCGCTGCTAGCCCGCCGGACCAGATCATGCGGCGCCAACTTCCCCTCTCCACCACGAAGCCGCCCTTTGCCGCCTCCGGTGATTACCACCGCTTTTCCCCCGACCACCTATACCACAACCGCCGAACTGTTGACCACGAACCCGAAGCCATCGTTGTTAAGTCTTGCCAATTGAAGCGGAAGAGTGACACATCAGATTTTGAAGCTGATTCTGGTGATAGGGTGAATCCTGTATCCATGGGAGCAGCTAATAATCCTTTTCATACGCCTAAATCTGGAAAAATAGGGAAGAGTGGCAAATCCTCCAGGCTTACTAAATGCAACAGATCTGGACCTCAAACCCCAGGTCCAAATATTGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGTTACGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAGGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAAAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGTATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAGTTTACAGGCAGAAGTTGAAAATCTTACCATGGAGGAGCACCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTACGTGACCTTTGTGAAAATGCAAATAGTGAGAAGTTGCTTTTTGTTACTGAGGAAGATATAAAGAAATTGCCATGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTGGAGGTTCCAGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGCAGATGTTGCACCCAAATTTCAACCTGCTCCAGAATTTAACAACCATCGACCAACTGTGGTTGTAGAGGACAACGGCAAAGACATTGCAGTGCAGGGACAAGATGGACAAGTTCCTAGTTCTGATTTTACTTCTGCGCAAGACTTTGTGAGTGGGATCATGAAAATCGTTCCTTCAAATGTTGACAGCGATGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGTTGTCGAATGGAATGAGCTGGGCACTCTTGACGATGATTTTTGTACGACTCGAGACCATGCTATAACTCCATCTGATACTTCGAATGTAAATGAAGCTACTGCAGCATCAAACCCTGCTGGGGGTTGA 1386 0.4459 MSGTRAPPAAASPPDQIMRRQLPLSTTKPPFAASGDYHRFSPDHLYHNRRTVDHEPEAIVVKSCQLKRKSDTSDFEADSGDRVNPVSMGAANNPFHTPKSGKIGKSGKSSRLTKCNRSGPQTPGPNIGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSSLQAEVENLTMEEHRLDEQIREMQERLRDLCENANSEKLLFVTEEDIKKLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGADVAPKFQPAPEFNNHRPTVVVEDNGKDIAVQGQDGQVPSSDFTSAQDFVSGIMKIVPSNVDSDADYWLLSDADVSITDMWRTESVVEWNELGTLDDDFCTTRDHAITPSDTSNVNEATAASNPAGG 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242326g00002 461 MobiDBLite consensus disorder prediction 63 137 - -
Stsc242326g00002 461 Coils Coil 220 261 - -
Stsc242326g00002 461 MobiDBLite consensus disorder prediction 63 78 - -
Stsc242326g00002 461 Coils Coil 158 178 - -
Stsc242326g00002 461 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Stsc242326g00002 461 Gene3D - 137 209 IPR036388 -
Stsc242326g00002 461 MobiDBLite consensus disorder prediction 103 137 - -
Stsc242326g00002 461 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Stsc242326g00002 461 MobiDBLite consensus disorder prediction 1 36 - -
Stsc242326g00002 461 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
Stsc242326g00002 461 FunFam E2F transcription factor 1 136 209 - -
Stsc242326g00002 461 CDD E2F_DD 218 324 IPR032198 GO:0046983
Stsc242326g00002 461 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Stsc242326g00002 461 Gene3D - 215 324 - -
Stsc242326g00002 461 SUPERFAMILY E2F-DP heterodimerization region 220 324 IPR037241 -
Stsc242326g00002 461 PANTHER TRANSCRIPTION FACTOR E2F 86 419 IPR015633 GO:0000978|GO:0006357
Stsc242326g00002 461 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242326g00002 Stsc-Chr242326 2376 6818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242326g00002 19 460 E2F-DP Transcription Factor Family AT5G22220 55.414 2.26e-151 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc242326g00002 E2F_CC-MB 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242326g00002 K06620 - gmx:100819817 689.108