Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242326g00001 ATGTCCGGCACCAGGGCACCTCCTGCCGCTGCTAGCCCGCCGGACCAGATCATGCGGCGCCAACTTCCCCTCTCCACCACGAAGCCGCCCTTTGCCGCCTCCGGTGATTACCACCGCTTTTCCCCCGACCACCTATACCACAACCGCCGAACTGTTGACCACGAACCCGAAGCCATCGTTGTTAAGTCTTGCCAATTGAAGCGGAAGAGTGACACATCAGATTTTGAAGCTGATTCTGGTGATAGGGTGAATCCTGTATCCATGGGAGCAGCTAATAATCCTTTTCATACGCCTAAATCTGGAAAAATAGGGAAGAGTGGCAAATCCTCCAGGCTTACTAAATGCAACAGATCTGGACCTCAAACCCCAGGTCCAAATATTGCAGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGTTACGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAGGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAAAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGTATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAGTTTACAGGCAGAAGTTGAAAATCTTACCATGGAGGAGCACCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTACGTGACCTTTGTGAAAATGCAAATAGTGAGAAGTTGCTTTTTGTTACTGAGGAAGATATAAAGAAATTGCCATGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTGGAGGTTCCAGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGATGTTGCACCCAAATTTCAACCTGCTCCAGAATTTAA 1008 0.4494 MSGTRAPPAAASPPDQIMRRQLPLSTTKPPFAASGDYHRFSPDHLYHNRRTVDHEPEAIVVKSCQLKRKSDTSDFEADSGDRVNPVSMGAANNPFHTPKSGKIGKSGKSSRLTKCNRSGPQTPGPNIAGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSSLQAEVENLTMEEHRLDEQIREMQERLRDLCENANSEKLLFVTEEDIKKLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVRCCTQISTCSRI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242326g00001 335 MobiDBLite consensus disorder prediction 63 78 - -
Stsc242326g00001 335 Gene3D - 216 324 - -
Stsc242326g00001 335 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Stsc242326g00001 335 Coils Coil 221 262 - -
Stsc242326g00001 335 MobiDBLite consensus disorder prediction 63 134 - -
Stsc242326g00001 335 Coils Coil 159 179 - -
Stsc242326g00001 335 FunFam E2F transcription factor 1 137 210 - -
Stsc242326g00001 335 PANTHER TRANSCRIPTION FACTOR E2F 86 323 IPR015633 GO:0000978|GO:0006357
Stsc242326g00001 335 Gene3D - 138 210 IPR036388 -
Stsc242326g00001 335 MobiDBLite consensus disorder prediction 1 36 - -
Stsc242326g00001 335 MobiDBLite consensus disorder prediction 103 134 - -
Stsc242326g00001 335 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Stsc242326g00001 335 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983
Stsc242326g00001 335 SUPERFAMILY E2F-DP heterodimerization region 221 323 IPR037241 -
Stsc242326g00001 335 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Stsc242326g00001 335 CDD E2F_DD 219 323 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242326g00001 Stsc-Chr242326 2376 6818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242326g00001 19 323 E2F-DP Transcription Factor Family AT5G22220 65.909 1.42e-127 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc242326g00001 E2F_CC-MB 8.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242326g00001 K06620 - gmx:100819817 495.352