Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242324g00005 ATGGGGGATGATATGTACAACTATGACAAGAATCTGTCATCATCCTCTTCCTCTCAGGACGAAATTTCTCTTTTCCTGCGTCAGATTCTGCTGCGTTCCTCACTACCTCACCAAGATGCACCACCACAACAACAACACCCTTCTTCTTCCTCCTCTTCTTGCTTCCCGTCAACCTCTCACCTTCAAGATGCCAAGATCTCACCACTCGGTTCCAGCACTGCTGCTTTTCTCTCTGCCTCTGCCTTGAAGGGGCACGGAGGTAATTCTGCTCCAATTGTTTCTTCTTCTTCCGTAGGCGTCAGTGTGAACGATACTGATGACTATGATTGTGAAAGTGAGGAGGGTGTTGAAGCTTTGGCAGAAGATGTTCCAGCAAAGTCTGTACCTTCTAGGAGTTCATCAAAGAGGAGCAGAGCAGCAGAAGTTCATAACTTGTCAGAAAAGCGAAGGAGGAGTAGGATCAATGAAAAGATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAATAAGACTGATAAGGCTTCAATGCTGGATGAGGCTATTGAATACCTTAAACAGCTTCAACTCCAAGTACAGATGTTGTCAATGAGAAATGGATTGAGTTTGCATCCTATGAGCTTTCCCGAAGGATTTCAGCCTCTACAATTCTCAAGAATGAGTCTGGAGTTCAGTGAAGAAAACAGGGACATTCCTTTAAACATGACAGAAACTCTGCCTCTGCACCAAGGCAACCCCTTGCACTACGCATCCAGTCTACCTAACAAACCAGCCATACCAAATCAACCATCAGTAACTTACCCTTCATATATTAACAACTCAGAAGCGCCTTTTGGGCTGGAATCGCCAATCCTACCACATACAAAACCCCTTCAGCCAGGAAGGTTTTCTGAGACGCATAGGGAAGACATACTGCTGCAGCAGCAATCAAATGCAAGCCATTCAGATACCAATCCGTTAGGTGGTTCTCAAGTTGTGAAAGAGTTGGAGACAGGAAACTTGGCCACAGCATCACTCTCCTTTGACTCGCAAACATGTGAAGCTAAGGACAACAACCCTCTGCAAACTTGCATTGCTGGAAGAGATCAATCATCATCAGTGATCATAAGGAATAGTTAG 1116 0.448 MGDDMYNYDKNLSSSSSSQDEISLFLRQILLRSSLPHQDAPPQQQHPSSSSSSCFPSTSHLQDAKISPLGSSTAAFLSASALKGHGGNSAPIVSSSSVGVSVNDTDDYDCESEEGVEALAEDVPAKSVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMSFPEGFQPLQFSRMSLEFSEENRDIPLNMTETLPLHQGNPLHYASSLPNKPAIPNQPSVTYPSYINNSEAPFGLESPILPHTKPLQPGRFSETHREDILLQQQSNASHSDTNPLGGSQVVKELETGNLATASLSFDSQTCEAKDNNPLQTCIAGRDQSSSVIIRNS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242324g00005 371 Pfam Helix-loop-helix DNA-binding domain 142 188 IPR011598 GO:0046983
Stsc242324g00005 371 Gene3D - 133 197 IPR036638 GO:0046983
Stsc242324g00005 371 MobiDBLite consensus disorder prediction 89 103 - -
Stsc242324g00005 371 MobiDBLite consensus disorder prediction 34 65 - -
Stsc242324g00005 371 CDD bHLH_AtPIF_like 139 200 IPR047265 -
Stsc242324g00005 371 MobiDBLite consensus disorder prediction 37 65 - -
Stsc242324g00005 371 MobiDBLite consensus disorder prediction 136 150 - -
Stsc242324g00005 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Stsc242324g00005 371 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 15 304 IPR031066 -
Stsc242324g00005 371 MobiDBLite consensus disorder prediction 86 150 - -
Stsc242324g00005 371 Coils Coil 177 197 - -
Stsc242324g00005 371 FunFam Basic helix-loop-helix transcription factor 133 196 - -
Stsc242324g00005 371 SMART finulus 144 193 IPR011598 GO:0046983
Stsc242324g00005 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242324g00005 Stsc-Chr242324 23322 26546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242324g00005 17 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 41.176 2.89e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242324g00005 HLH 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242324g00005 - - adu:107487805 584.334