Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242324g00002 ATGTCAGACGAAGAAGCTGCAGCAACTACCGCCGGCGCCGGTAGGCGAAGGACCAGAGGTCCCACTTCCTCCGCCCGCAGCGAGGCCCTAGAGCGTCTCAAAGCCCGCATCCGCGGCGGGCCCCGATCCGATGGGGCCACCCCCCAGATCAGACTCGAAAACCCCATCTACGACACTGTTGAGGAGGAAGAGTATAACGCCCTTGTTGCCCAGCGCCGTGAGCAGGCCCGCGCCTTCATTGTTGACGATGACGGCCTTGGCTACGGCGACGAAGGTGAGGAAGAGGACTGGTCTAAGGCAGGTTACTCCCTCTCCTCTGACGAATCAGATGGCGCTGAAAATGAAGGCAGGCCAAAGCGGAAGAAGATTGAAAAGAAAGAACACAATCCCAACCATAAACGCACGTCCGCTGCGCTCTCCGCCGCCGCTGTCGGCGCCCAGAGGCTGTCCTCCATGTTCACCTCATCGACGTTCAAGAAGAGCAGGGACGACAAGGTCCCCGACAGCATCGTTGACGATGTTCTCGCGGAGTTTGCAGCCGACGAGACCGATAGGGAACGGCGCAGAAGATCCCATCCGAAAGCCATTTCCAATTCGAATTCGAATTTATCCTCTGCTACAAATGATGCGCCGCGGGTTAATTGCGTTTTCGGCAGCAGCAATTCGTCAATTGCTGGAGCATCTGATTTGATGAGAGGTTCTTCGTTGCTCAAGACCGCCGTAAATTGTGATGTTGAGTCCGTTAGGGTTGTTAGCAATGACGTCAGCGATTTGGGTTCAGAGCAGAAGAAATGCGAGACTGTTAAAGAAAATGAGCTTTCTATAGAAGGCTCGGATATTGGGAACGTTTTTAGTTCTGAGAATGGTGGTGCATCCTTTGAGCAAGTTCCCAGTAATGGTAATGTTGGTGAGGAGGAGCCTTTGAAGGACTCTACGGTATTGGAAAAACCTGTTGCTGTGAAAAAGGAATTGTTTTCTTTTAACGCGAAGCTTAAGGATGAAAAAGAGGACCCTGCTTTGAGTGCTACTGCAGGTTGGCAAGCAGTGAGGAATGGCGGTGCAGCTAATGTAAGTGTTTCGGATTCGAAAGAACACTCAGAATTCAATCTGGAGGAAGATGGTTCGCTACCATTCTACATACTCGATGCCTATGAGGAGTTTAATGGTGCTAATAGGGGAACGCTTTATTTATTTGGGAAGGTTAAAGCTGGGAACTCGTATCAGAGTTGTTGTGTTGTTGTGAAGAACATGCAGAGATGTGTCTATGCCATTCCAAGTCACCCTATACATCTCACTGATGAAATGGTGAAACTTGAGAAAGATGTCCAGAAGTCTGCAGATTTCCATAAAAAGCTGCAAGATGCAGTATCTGATTTAAAGAACGAGTTAGCAAACCATCTTCTGAACCTGAATGTTTCAGGCTTTAGTATGGCTCCTGTTAAGAGGAAGTATGCATTTGAAAGGCTTGAAATTCCCTCTGGTGAAAATTATGTGCTTAAAATCAGTTATCCATTCAAGGATCCAGTACTTCCTGCGGACCTGAAAGGAGAAAACTTCTCTGCTCTTTTAGGAACTCATTACAGTGCTCTGGAACTTTTTCTGGTTAAAAGAAAGATTAAGGGACCTTCATGGCTACAGGTTTCAAACTTTTCAAGTTGCCCAACTTCTGAGAGGGAAAGATTTGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCCCCTAAAGACATAAGGGTTTCGACTTCATCAAAAATCACTTTTGAGATTCCTCCTGCGGTTGTCACAGCAATAAATTTGAAAACTACCATAAATGAAAAACAGAACGTAAATGAGATTGTATCTGCATCTATAGTCTCCTGCTATATGGTTAAGATTGACACGCCTATGTTAGCTTCAGAATGGAAGCGACCTGGAATGCTGACACATTTTACTGTCATTCGTAAAATTGATGGGAATATATTTCCTCTGGGGTTCAGTAAGGAGGTTACAGACAGAAACTCAAAATCTGGGTCAAATGTTCTCTGTGTTGAAAGCAGTGAAAGAGCTTTGCTGAATCGCCTGATGACAGAATTACATAAGTTGGATAGCGATGTTCTTGTTGGGCATAATATATCTGGATTTGACCTGGAGGTACTCCTCCATAGATCCCAGGCTTGCAAAGTACCAAGCAACATGTGGTCTAAATTAGGCCGCCTCAAACGCTCTGCATTGCCTAGGCTTGATAGAGGAAGCAAGGCATTTGGTTCTGGAGCTCGTCCTGCTATCATGTCTTGTATGTCTGGCCGGCTTCTTTGTGATACATTCTTGTGTTCCCGTGATCTGCTCAAAGAGGTCAGTTATTCGTTGACTGAACTTACAAAAACACAGCTGAAGAAGTCTAGGAAGGAAATTGCTCCACATGATGTTCCAAAGAAGTTCCAATCCACTGAATCCCTAATTGAGCTTGGTGCTCGGGCACAGAGAGTGGAGTTTCTTTTGTTGCATGCTTTCCATGCAAAGAAGTATATGGTGCCGGACAAAATTCCAAACTATGAAAAAGAAACAAAATTGACTAAACGCAAAGTAGCTCATGGTATTGAGGATAGCAACTTAGAAGAAGCAGATGGTGGTGAAGCAAACTATGATAATGATGCTGCCGATACTGATAATAAGAAAAGCAAAAAGGCTCCTTCTTATGCTGGAGGTCTGGTATTGGAACCAAAGAAGGGTCTATATGACAAATATATTCTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATATAATATCTGCTTTACCACTGTTGAAAGATCCCAAGGCACATCATTTTCTCGTTTACCATCCAGTCTAGAAAATGGGGTCTTGCCAGAGTTGTTGAAAAATCTGGTTGAGAGGAGGAGGTTGGTAAAAAAGTGGATGAAGAAAGCATCAGGTCTTAAAGTGCAGCAGCTGGACATTCAGCAGCAAGCATTGAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGGTTTTCCAATTCAAGATTTTATGCAAAGCCAATTGCTGAACTTATAACCCTACAAGGAAGGGAAATACTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTCATATATGGAGATACTGATTCAATAATGATATACAGTGGTCTAGATGATATTGCAAAAGCAAAAGCAATGGCTTCGAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTACTACTTAAGAAAAAGAAATACGCAGCTGTGAAAGTGCAGTTCAATGATGATGCCCCATATGAAGTTATTGAACGTAAAGGTCTTGATATTGTCCGCCGAGATTGGAGCTTACTAGCTAAAGAATTGGGTGATTTTTGCTTGACTCAAATTTTGTCAGGAGGATCATGTGAAGATGTCGTTGAATCAATTCACAGTTATCTCAGGCAGGAACAAGAAAAAATGAGGAGCGGACAAGTATCACTGGAGAAATATGTCATCAATAAAACATTGACTAAACCTCCTGAGGCTTATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGAATGAAGCAACAGGGTTACTCCTCTGGTTGTTCTGTTGGTGATACAATCCCTTATATAATTTGCTGTGAGGAGGGCTGTAGTTCGGGTAGTGCAACAGGCATTGCTCAGCGTGCAAGGCATCCAGATGAACTAAAACAAGAGCAAGGGAAATGGCTTATTGACATTGAGTACTATCTGTCACAACAGATTCATCCAGTGATATCACGTCTTTGTGCATCAATCCAGGGAACAAGCCCAGAAAGACTGGCTGACTGTCTAGGGCTTGATTCATCAAAGTTTCAACATAAATCAAGTGAAGCTCCAAGTAGTGATCCTTCAAGCTCACTTTTATTTGCTGCTGATGATGAAGAAAGGTACAGGGAATGTGAGTCACTGGTATTGTGTTGCCGCAGCTGCTCTGATTCGTTTGAATGCCCACCTGTTTTTAAGTCGATTTGTTTGTTGGGAAGTGAAAAGATAACCAGCGCAGGCACGGAGGAACCCAGTTACAATTTCTGGCGTAAACTGCGTTGTCCTAAATGCCCGGAAGATGGTATTGAAAGAATATCTCCTGCAATGCTAACCAATCAGGTCAAAATGCAAGCAGAGAAGTTTGTTTTAATGTACTACAGAGGTTTACTGATGTGTGATGATGAAACGTGTAAGCATACGACACGCAGTATCAACCTTAAGTTGTACACTGAGGCAGACTTGTACAAGCAGCTCTCGTATTTCTGCCACGTGTTGGATACTTTTTGCAATATGGAGAAGATGGAGGTTAAATCTAGGATCCCAATTGAGAAAGAGTTGATAAAGATTAGACCAATGGTTGATCAGGCAGCATCCTCGGTACAGAAGTTAAGAGACCGTTGTGCCTACGGTTGGGTGAAGTTGCAGGACTTCGTTGTTTCTGTTTAA 4494 0.4368 MSDEEAAATTAGAGRRRTRGPTSSARSEALERLKARIRGGPRSDGATPQIRLENPIYDTVEEEEYNALVAQRREQARAFIVDDDGLGYGDEGEEEDWSKAGYSLSSDESDGAENEGRPKRKKIEKKEHNPNHKRTSAALSAAAVGAQRLSSMFTSSTFKKSRDDKVPDSIVDDVLAEFAADETDRERRRRSHPKAISNSNSNLSSATNDAPRVNCVFGSSNSSIAGASDLMRGSSLLKTAVNCDVESVRVVSNDVSDLGSEQKKCETVKENELSIEGSDIGNVFSSENGGASFEQVPSNGNVGEEEPLKDSTVLEKPVAVKKELFSFNAKLKDEKEDPALSATAGWQAVRNGGAANVSVSDSKEHSEFNLEEDGSLPFYILDAYEEFNGANRGTLYLFGKVKAGNSYQSCCVVVKNMQRCVYAIPSHPIHLTDEMVKLEKDVQKSADFHKKLQDAVSDLKNELANHLLNLNVSGFSMAPVKRKYAFERLEIPSGENYVLKISYPFKDPVLPADLKGENFSALLGTHYSALELFLVKRKIKGPSWLQVSNFSSCPTSERERFVSWCKFEVIVDSPKDIRVSTSSKITFEIPPAVVTAINLKTTINEKQNVNEIVSASIVSCYMVKIDTPMLASEWKRPGMLTHFTVIRKIDGNIFPLGFSKEVTDRNSKSGSNVLCVESSERALLNRLMTELHKLDSDVLVGHNISGFDLEVLLHRSQACKVPSNMWSKLGRLKRSALPRLDRGSKAFGSGARPAIMSCMSGRLLCDTFLCSRDLLKEVSYSLTELTKTQLKKSRKEIAPHDVPKKFQSTESLIELGARAQRVEFLLLHAFHAKKYMVPDKIPNYEKETKLTKRKVAHGIEDSNLEEADGGEANYDNDAADTDNKKSKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSQGTSFSRLPSSLENGVLPELLKNLVERRRLVKKWMKKASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMASKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFNDDAPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSYLRQEQEKMRSGQVSLEKYVINKTLTKPPEAYPDAKNQPHVLVAQRMKQQGYSSGCSVGDTIPYIICCEEGCSSGSATGIAQRARHPDELKQEQGKWLIDIEYYLSQQIHPVISRLCASIQGTSPERLADCLGLDSSKFQHKSSEAPSSDPSSSLLFAADDEERYRECESLVLCCRSCSDSFECPPVFKSICLLGSEKITSAGTEEPSYNFWRKLRCPKCPEDGIERISPAMLTNQVKMQAEKFVLMYYRGLLMCDDETCKHTTRSINLKLYTEADLYKQLSYFCHVLDTFCNMEKMEVKSRIPIEKELIKIRPMVDQAASSVQKLRDRCAYGWVKLQDFVVSV 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242324g00002 1497 PRINTS DNA-directed DNA-polymerase family B signature 985 997 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc242324g00002 1497 PRINTS DNA-directed DNA-polymerase family B signature 1038 1046 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc242324g00002 1497 PRINTS DNA-directed DNA-polymerase family B signature 909 922 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc242324g00002 1497 CDD DNA_polB_alpha_exo 590 815 - -
Stsc242324g00002 1497 CDD POLBc_alpha 885 1288 IPR045846 GO:0003887|GO:1902975
Stsc242324g00002 1497 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 816 1496 - -
Stsc242324g00002 1497 MobiDBLite consensus disorder prediction 83 137 - -
Stsc242324g00002 1497 MobiDBLite consensus disorder prediction 195 210 - -
Stsc242324g00002 1497 ProSitePatterns DNA polymerase family B signature. 1040 1048 IPR017964 GO:0000166|GO:0003676
Stsc242324g00002 1497 Gene3D Palm domain of DNA polymerase 878 1102 IPR023211 -
Stsc242324g00002 1497 MobiDBLite consensus disorder prediction 181 210 - -
Stsc242324g00002 1497 Pfam DNA polymerase family B 816 1272 IPR006134 GO:0000166|GO:0003677
Stsc242324g00002 1497 Gene3D - 378 576 - -
Stsc242324g00002 1497 Pfam DNA polymerase alpha subunit p180 N terminal 30 97 IPR024647 -
Stsc242324g00002 1497 Coils Coil 1066 1086 - -
Stsc242324g00002 1497 Pfam DNA Polymerase alpha zinc finger 1312 1493 IPR015088 GO:0003887|GO:0006260
Stsc242324g00002 1497 SMART polmehr3 590 1052 IPR006172 GO:0000166|GO:0003676|GO:0003887
Stsc242324g00002 1497 Gene3D DNA Polymerase alpha, zinc finger 1311 1483 IPR038256 -
Stsc242324g00002 1497 FunFam DNA polymerase 1116 1302 - -
Stsc242324g00002 1497 SUPERFAMILY DNA/RNA polymerases 885 1288 IPR043502 -
Stsc242324g00002 1497 Coils Coil 449 469 - -
Stsc242324g00002 1497 Pfam DNA polymerase family B, exonuclease domain 407 784 IPR006133 -
Stsc242324g00002 1497 FunFam DNA polymerase 950 999 - -
Stsc242324g00002 1497 Gene3D - 590 863 IPR036397 GO:0003676
Stsc242324g00002 1497 MobiDBLite consensus disorder prediction 861 891 - -
Stsc242324g00002 1497 MobiDBLite consensus disorder prediction 1 55 - -
Stsc242324g00002 1497 NCBIfam DNA polymerase (pol2) 816 1270 - -
Stsc242324g00002 1497 Gene3D Helix hairpin bin 948 999 - -
Stsc242324g00002 1497 Gene3D - 1116 1301 IPR042087 -
Stsc242324g00002 1497 SUPERFAMILY Ribonuclease H-like 370 811 IPR012337 -
Stsc242324g00002 1497 Gene3D - 418 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242324g00002 Stsc-Chr242324 5527 15988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242324g00002 13 1495 Core DNA Replication Machinery Family AT5G67100 56.031 0.0 1657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242324g00002 K02320 - gmx:100798779 1956.41