Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242324g00001 ATGCCGGATCATTATTCGAGTGGTGGTGCAACAATGAACGACCAGCTCTCCAACCCAACCTCCATCTTCGGTCTACGCCTCTGCGTTGTTCTTGGTGTCTGCGTTGGCGCCTCCGTTGTCCTCCTCTTATTCCTTATCTCCATTTGTCTCGCTTCCAAGCGCTCCAAGAACAGCAAAACCACCACCACCACCAACAACAACACTTCATCTTCAATCCCCGTCCCTGATGTATCCAGGGAGATCCAAGAGATCAGAGTTATCGACCCAAACCCATTGCCCGACCCGATTCCCGAACCGGAACCGGACGAAGAGAACCCATCCGTGGTCTACAACAGAATCCAGTTCGAGATAGGGAAGAACCATAGAATCTCTTATCCTACTGAACAACGTCCTTTTCTAAGGTCTTCTTCCCGTGAAGGCAGTGGTGAGGTTCCTACCGTGATCCCTGAGGTTTCTCACTTGGGTTGGGGGCACTGGTACACCCTCAGGGAGCTTGAGGATTCCACCAATGGGTTTGCACCGGAGAATGTCATTGGTGAAGGTGGCTATGGAATTGTTTACCATGGTGTCTTGAAGGACAACACAAACGTTGCCGTTAAGAATTTGCTCAACAACAGGGGACAAGCAGAGAGAGAGTTTAAGGTTGAAGTGGAAGCTATAGGAAGAGTTCGGCACAAGAATCTAGTGAGGTTGCTCGGTTATTGTGCTGAAGGAGCACACAGAATGCTTGTGTATGAGTACGTTGACAATGGTAACTTGGAGCAGTGGCTGCATGGTGATGTTGGGTCATGCAGCCCTCTAACTTGGGAGATTCGAATGAACATTATCCTTGGAACGGCTAAAGGGCTAACTTATCTTCATGAGGGGCTGGAGCCAAAAGTCGTTCACCGTGATATCAAATCAAGCAATATCTTGATCGATAAGCAGTGGAATTCCAAGGTTTCAGATTTTGGCCTTGCCAAACTCCTTGGCTCTCACAACAGCTATGTCACCACCCGTGTTATGGGTACATTTGGATATGTAGCTCCAGAATATGCAAGTACTGGCATGTTGAATGAACGAAGTGATGTATATAGTTTTGGAATTCTTATCATGGAAGTAATCACAGGGAGAAACCCGGTTGATTATAGCCTCCCGCCGGAAGAGGTGAATTTAGTTGATTGGCTCAAGAAGATGGTTAGTAACAGAAATCCAGAGGGAGTGTTGGATCCTAAGCTTCCTGAGAAACCAACATTAAGGGCACTAAAGCGAGTCCTTCTTGTAGCTCTACGCTGCACAGACCCTAATGCACAAAAACGGCCTAAAATGGGGCATGTTATACACATGCTTGAGGCTGAAGATTCACTCAATTACAAAGAGGATCGCAGAACCAGAAGGGATGCAGATCAGTCACCTAACCCTGGAGTAAATGATGGATTAACAGTGAATGCAACTGTATCAGATGGTGACTGTAACAATGAAAATGGCAGGTGTGGCCATGACACAACAAATAGCCATCAAGTAGAAAAACAATAA 1515 0.4667 MPDHYSSGGATMNDQLSNPTSIFGLRLCVVLGVCVGASVVLLLFLISICLASKRSKNSKTTTTTNNNTSSSIPVPDVSREIQEIRVIDPNPLPDPIPEPEPDEENPSVVYNRIQFEIGKNHRISYPTEQRPFLRSSSREGSGEVPTVIPEVSHLGWGHWYTLRELEDSTNGFAPENVIGEGGYGIVYHGVLKDNTNVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGSCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILIDKQWNSKVSDFGLAKLLGSHNSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVITGRNPVDYSLPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTLRALKRVLLVALRCTDPNAQKRPKMGHVIHMLEAEDSLNYKEDRRTRRDADQSPNPGVNDGLTVNATVSDGDCNNENGRCGHDTTNSHQVEKQ 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242324g00001 504 ProSiteProfiles Protein kinase domain profile. 172 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242324g00001 504 FunFam Putative receptor-like serine/threonine-protein kinase 248 459 - -
Stsc242324g00001 504 FunFam Probable serine/threonine-protein kinase At1g01540 152 247 - -
Stsc242324g00001 504 CDD STKc_IRAK 178 444 - -
Stsc242324g00001 504 SUPERFAMILY Protein kinase-like (PK-like) 156 444 IPR011009 -
Stsc242324g00001 504 Coils Coil 192 212 - -
Stsc242324g00001 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Stsc242324g00001 504 MobiDBLite consensus disorder prediction 56 75 - -
Stsc242324g00001 504 MobiDBLite consensus disorder prediction 88 107 - -
Stsc242324g00001 504 PANTHER OS01G0323000 PROTEIN 11 459 - -
Stsc242324g00001 504 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Stsc242324g00001 504 SMART serkin_6 172 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242324g00001 504 MobiDBLite consensus disorder prediction 463 495 - -
Stsc242324g00001 504 Gene3D Transferase(Phosphotransferase) domain 1 248 461 - -
Stsc242324g00001 504 Gene3D Phosphorylase Kinase; domain 1 152 247 - -
Stsc242324g00001 504 MobiDBLite consensus disorder prediction 454 504 - -
Stsc242324g00001 504 Pfam Protein kinase domain 175 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242324g00001 Stsc-Chr242324 1637 4445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242324g00001 136 449 Trihelix Transcription Factor Family AT1G70460 45.625 7.54e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc242324g00001 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242324g00001 - - gmx:100797726 748.814