Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242322g00003 ATGAAAGGAGGCATATACGAGAGGAGTTATTGGTTGCTGGGAAATTTGATGTGTGTTACAAGTTTTGAAATGGTTATCAAGGAGAAATCTACACTGGACAATGAGACTCTACAATACAAACCATCGACTCCTTATATAACTGGGACACCACTACAAAACAATCTTCATGAACTCTGGGCTCTTCTCAATTTTCTTCTTCCTGAAATCTTTGGCTCTGCTGAACCTTTTGATGAATGGTTCCAAATATCAGGTGAAAATGACCAGCAAGCGGTTGTTCAACAATTACACAAGGTCCTTTGCCTGTTTCTCCTACGGAGGCTAAAGTCAGATGTCGAGAAAGGGTTGGCTCCATACTCAACAGACCATCTTGTCACAAATGATGGAAAAATGGTTCTGTTGGATAAGTTACTTCCTAAATTAGAAGAGCATGATTCTCGGGTCCTTATGTTTTTAAATGTGACATTGTCATTTTCCCAGATTACTAGGCTGCTGGACATACTTGAAGATTATTTGATACTTCGGTGA 525 0.3943 MKGGIYERSYWLLGNLMCVTSFEMVIKEKSTLDNETLQYKPSTPYITGTPLQNNLHELWALLNFLLPEIFGSAEPFDEWFQISGENDQQAVVQQLHKVLCLFLLRRLKSDVEKGLAPYSTDHLVTNDGKMVLLDKLLPKLEEHDSRVLMFLNVTLSFSQITRLLDILEDYLILR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242322g00003 174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 114 IPR027417 -
Stsc242322g00003 174 Gene3D - 120 173 IPR027417 -
Stsc242322g00003 174 Gene3D - 45 115 IPR038718 -
Stsc242322g00003 174 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 39 118 - -
Stsc242322g00003 174 Pfam SNF2-related domain 46 120 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242322g00003 Stsc-Chr242322 15684 17509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242322g00003 15 117 RAD5 or RAD16-like Gene Family AT5G22750 27.928 1.65e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc242322g00003 SNF2_N 4.8e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242322g00003 K11654 - phu:Phum_PHUM614620 152.525