Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242312g00002 ATGCCATTTGGTTTGGTCTCGGCCTGGAACAAGCGCCGTCGAAGCAAGTCTCAAGATCATACAGACCCTTGGATTTATAGGCCTGCAGAGTTTTGGCAACTCGAAGATCAGGCACCACAAGCTACAAAAAAGAGGCATGGATCATCTGTTTTCACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGATAATCTTCTTGGAAAAGGTGGATTTGGAAAGGTTTACAGAGGAACTCTGCGTTCAGGGGAGGTTGTAGCAATAAAAAAGATGGAGCTACCGGCGATTAGAGAAGCCGAAGGAGAGCGTGAATTCCGGGTGGAAGTGGACATATTGAGCAGACTAGACCACCCAAATCTTGTTTCCTTGATTGGCTACTGTGCTGATGGGAAGCACAGATTCTTAGTATATGAGTATATGCAAAATGGGAACCTGCAACATCATTTGAATGGAATTGGTGAAAGAAAAATGGATTGGCCTCAAAGGCTGAAAGTGGCATTGGGAGCTGCAAAAGGACTTGCTTATCTGCATTCAAGCTCTTGTGTTGGGATCCCTATTGTTCACAGAGATTTCAAATCCACCAATGTTCTTCTAACCTCCAATTTTGAAGCAAAGATATCTGATTTTGGGCTAGCTAAACTAATGCCAGAAGGACAAGAGACACATGTAACTGCTAGAGTGTTTGGTACCTTTGGCTATTTTGATCCTGAATATACATCGACTGGAAAACTCAGTCTACAAAGTGATGTTTATTCTTTTGGAGTTGTTCTTTTGGAGCTTTTGACTGGACGCAGAGCAGTAGATCTAAACCAAGGTCCAAATGATCAAAACCTTGTGCTCCAGGTTTGTATGAAACTTATTACTCCATATCTAATAGTAAAAGAATAA 894 0.4195 MPFGLVSAWNKRRRSKSQDHTDPWIYRPAEFWQLEDQAPQATKKRHGSSVFTLKEMEEATCSFSDDNLLGKGGFGKVYRGTLRSGEVVAIKKMELPAIREAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMQNGNLQHHLNGIGERKMDWPQRLKVALGAAKGLAYLHSSSCVGIPIVHRDFKSTNVLLTSNFEAKISDFGLAKLMPEGQETHVTARVFGTFGYFDPEYTSTGKLSLQSDVYSFGVVLLELLTGRRAVDLNQGPNDQNLVLQVCMKLITPYLIVKE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242312g00002 297 Pfam Protein kinase domain 64 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242312g00002 297 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Stsc242312g00002 297 FunFam Os07g0541700 protein 142 232 - -
Stsc242312g00002 297 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Stsc242312g00002 297 FunFam serine/threonine-protein kinase PBS1-like 31 141 - -
Stsc242312g00002 297 SUPERFAMILY Protein kinase-like (PK-like) 49 291 IPR011009 -
Stsc242312g00002 297 CDD STKc_IRAK 69 288 - -
Stsc242312g00002 297 PANTHER OS01G0750732 PROTEIN 36 282 - -
Stsc242312g00002 297 Gene3D Transferase(Phosphotransferase) domain 1 142 294 - -
Stsc242312g00002 297 ProSiteProfiles Protein kinase domain profile. 63 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242312g00002 297 Gene3D Phosphorylase Kinase; domain 1 30 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242312g00002 Stsc-Chr242312 2929 4553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242312g00002 46 281 Receptor kinase-like Gene Family AT3G58690 51.037 3.14e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Stsc242312g00002 Pkinase 7.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242312g00002 - - gmx:100820613 523.472