Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242310g00002 ATGAGCTTCTCCAAAAACGACGTCGTCGTCCAAACCGAACCAACCACACCACCAACACCAAACGACACCACCGTTTTGTTAGGCAAGTACGAGCTCCGCGAACTTCTCGGCGTAGGCGCGTCCGCTAAAGTGTACCACGCGACGCGCGTGACTGACGGTAAGAGTGTGGCAGTTAAGGCCGTTAGCAAACGCCACGTCATCGCTAACGGCCTCGCCGAGAATCTCGAGCGTGAGATCTCCGTCACGCGCCGCCTCCGCCACCACCCTAACATCATCAACCTCCTCGAGGTCCTCGCCACTAAAACCAAAATCTACCTTGTTATGGAGTTCGCCGCCGGCGGAGAGCTCTTCCAGAAGGTCGCCGACGGCGGCCGCATGACGGAAGACGTCGCCAGAAAATACTTCCGGCAGCTGATCTCCGCCGTGAAGCACTGCCACTCCGCCGGCGTCTACCACCGTGACCTCAAGCTCGACAACCTCCTTGTCGACGATGACGGCGACCTTCAAGTCTCCGATTTCGGATTGAGCGCCGTGAAGAACCAGATCCGACCCGACGGGTTGCTCCACACGGTTTGTGGGACCCCTGCTTACGTGGCACCTGAGATCTTGGCGAAGAAGGGTTATAATGGGGCCACGGTGGACGTGTGGTCATGCGGCGTCGTTTTGTTCGCATTAACCGCGGGATTTTTACCCTTCAACGATTACAATATTACCATTTTGTACCGCAAAATTTACCGCGGTCAATTTCGGTGTCCGAAGTGGATTTCTTCTCAGCTCAAAAAACTTTTATCTCGTTTGCTCGATGTAAATCCGCAAACGAGAATTACCGTTGATGAGATTATGCAAGACCCGTGGTTTAATGCGGGTGGATACCGGTTTAACCGGGTTTTAGTTGAAGAACCAGAACCCGAGTGGGAAAAGAGTCAAGTTAAAAGTAAAACTGAAATGCTAAATGCATTTGACTTGATATCGTTTTCGACCGGGTTGGATATGTCGGGTCTATTTGTGCATTCGGGTGATCCGAACCAGGTGGAGAGATTTGTGTTAAGAGAGAAAGTAGAGAGGATACTTGAGAAGGTGGAAGAGGTGGTTAAGGGTAGCAAAATAAGAGTGAGAAGGAATGAGAAGTGTGAAGGTGTGAGGTTGGAAGGGCAAGATGGTAATTTAATTGCACTTGTGTTGGTTTACCGGTTAACCGATGAGTTAGTGGTGGTTGAAGTGAAGAGTATTGGAAAGATGAATTGTAATAACCCCAATTTGAGGAGTTGCCTCATGAATAGTAGGCATAATAAGTCTTTATAA 1302 0.5008 MSFSKNDVVVQTEPTTPPTPNDTTVLLGKYELRELLGVGASAKVYHATRVTDGKSVAVKAVSKRHVIANGLAENLEREISVTRRLRHHPNIINLLEVLATKTKIYLVMEFAAGGELFQKVADGGRMTEDVARKYFRQLISAVKHCHSAGVYHRDLKLDNLLVDDDGDLQVSDFGLSAVKNQIRPDGLLHTVCGTPAYVAPEILAKKGYNGATVDVWSCGVVLFALTAGFLPFNDYNITILYRKIYRGQFRCPKWISSQLKKLLSRLLDVNPQTRITVDEIMQDPWFNAGGYRFNRVLVEEPEPEWEKSQVKSKTEMLNAFDLISFSTGLDMSGLFVHSGDPNQVERFVLREKVERILEKVEEVVKGSKIRVRRNEKCEGVRLEGQDGNLIALVLVYRLTDELVVVEVKSIGKMNCNNPNLRSCLMNSRHNKSL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242310g00002 433 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Stsc242310g00002 433 FunFam Maternal embryonic leucine zipper kinase 20 297 - -
Stsc242310g00002 433 Gene3D Kinase associated domain 1, KA1 313 425 - -
Stsc242310g00002 433 Pfam NAF domain 315 372 IPR004041 GO:0007165
Stsc242310g00002 433 ProSiteProfiles Protein kinase domain profile. 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242310g00002 433 SMART serkin_6 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242310g00002 433 MobiDBLite consensus disorder prediction 1 21 - -
Stsc242310g00002 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Stsc242310g00002 433 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Stsc242310g00002 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 410 - -
Stsc242310g00002 433 SUPERFAMILY Protein kinase-like (PK-like) 26 308 IPR011009 -
Stsc242310g00002 433 CDD CIPK_C 318 408 - -
Stsc242310g00002 433 Gene3D Transferase(Phosphotransferase) domain 1 116 289 - -
Stsc242310g00002 433 FunFam Aurora kinase A 22 114 - -
Stsc242310g00002 433 Pfam Protein kinase domain 30 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242310g00002 433 Gene3D Phosphorylase Kinase; domain 1 32 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242310g00002 Stsc-Chr242310 13713 15014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242310g00002 19 411 CBL-interacting serine-threonine protein kinases AT2G30360 54.135 5.98e-153 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc242310g00002 Pkinase 1.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242310g00002 - K12761 gmx:100788245 499.975