Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242307g00001 ATGTGGATACTGGATCATGGGAATGGTTGCATCCACTATCCAGGAAGCAGCAGCAGAATGATGAAGAAGAAGAAAAGAAAAGTGTGGAGTTTGGAGAGCTGGAAGAAGTGGAAGGATCATGAAGCTAGGAAGTCGCAAGTTGGAGGTGGCGGAGTTGCAGGTTCCCAGACTGAGCTTGAAACTGATGCTGCTGATTCCTTCTCAGATCCTCCTCTTGATCGACTCCAGACATGCGCTGAAAATGCAAAGGAAGAAGGTGAGAAGGCGTCCTTGATTCCCCAGCCAAGACGGCCAGCCCTCTCCTCTCTGCAAATACCGCCATGGTCACTGGATGCCGCATTATCTTCTTATGCAAACACGGATGGTCCTTCCCTCTCCCTCTCCCTCTCCAGTCCCACTCCCAGAGGGCTTCCACCAAGACCAAATTCGGCCAGAGTAAGGTCTTCCATCAGAAGTATAATTTCTCAAGGCAGCTTCAGGGCCAGAACTACTCCCCACCACCCTGAAACCACACTTCTCATTCTTCCTCATACTACCCTCTCAAATGCACCTTTCGATAACCCTTCTACTTCTACCACCCTCTCTCTTAATGCTAAGCCTTCTTCCTCTCCATTCGCAAAGGTTGCCCACTCATTACCAGTTACTCCAATTGCATCTTTAGCTTCAGAAAATGTACATCTCCCATGTGCTTCTCATTTAAATACAATGGATGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCGGTTGATGCCAAGGCTACCAAATTAAGGCGCACTGAATCTAGGGTCTTGATTCGTGTAATTTCGGCTAGGCAGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATGCCCCAGTCATGGAGATTGCCATTGAGGATGCTACGGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTTGGGGAAGGAGGAAATATGCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGACTGTGCAGTAAAATGGTTTAGTATTAAGGGAAACAGGACCTGCGATGTCTGCAACCAGGATGTTCAAAACCTGCCGGTAACGCTGTTGAAAATTTATAATCCTCAACCCCCTGCCAGACAGCCGCAAAATGTGGAACAACCAAGGGAAATACCTTATTACAGGATCTGGCATGATATACCGGTACTCATCTTGGTCAGCATGCTTGCGTACTTCTGCTTTTTGGAGCAATTACTGGTTTCAGATTTGGGTCCTCGGGCTCTCGCCATTGCATTACCTTTCTCCTGTGTTTTGGGTCTCCTTTCATCCATGATTGCGTCAACCATGGGTAAATTTGTTTCCTTCTGTATGCCAAAGCATATTACAACCCAAAGGTCTGAAACAAGAGACTTGATCTGCGCGACTGCGCCCCTCACTTCTCAGAATTGCCCTCATTATGCTCTTGATTGTTGA 1461 0.4689 MWILDHGNGCIHYPGSSSRMMKKKKRKVWSLESWKKWKDHEARKSQVGGGGVAGSQTELETDAADSFSDPPLDRLQTCAENAKEEGEKASLIPQPRRPALSSLQIPPWSLDAALSSYANTDGPSLSLSLSSPTPRGLPPRPNSARVRSSIRSIISQGSFRARTTPHHPETTLLILPHTTLSNAPFDNPSTSTTLSLNAKPSSSPFAKVAHSLPVTPIASLASENVHLPCASHLNTMDVKQHITRSLSVPVDAKATKLRRTESRVLIRVISARQHLATVDGTSTGDAPVMEIAIEDATADIPEEEAVCRICLAELGEGGNMLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCNQDVQNLPVTLLKIYNPQPPARQPQNVEQPREIPYYRIWHDIPVLILVSMLAYFCFLEQLLVSDLGPRALAIALPFSCVLGLLSSMIASTMGKFVSFCMPKHITTQRSETRDLICATAPLTSQNCPHYALDC 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242307g00001 486 CDD RING_CH-C4HC3_MARCH 307 355 - -
Stsc242307g00001 486 PANTHER OS02G0165000 PROTEIN 80 445 - -
Stsc242307g00001 486 SMART ringv_2 306 355 IPR011016 GO:0008270
Stsc242307g00001 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 362 IPR013083 -
Stsc242307g00001 486 SUPERFAMILY RING/U-box 303 358 - -
Stsc242307g00001 486 MobiDBLite consensus disorder prediction 38 73 - -
Stsc242307g00001 486 MobiDBLite consensus disorder prediction 121 147 - -
Stsc242307g00001 486 Pfam RING-variant domain 307 354 IPR011016 GO:0008270
Stsc242307g00001 486 ProSiteProfiles Zinc finger RING-CH-type profile. 299 361 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242307g00001 Stsc-Chr242307 5666 10037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242307g00001 290 361 C3H Transcription Factor Family AT2G37950 47.945 2.12e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242307g00001 - - ahf:112765571 635.565