Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242303g00001 ATGGCGATGGCGAAGAACCTGTACTGGTTGAAGGAAGTGTCGAACAACGTGAAATCAGGTGGAAGGAGAGGAGGGAGGAGGCTGTCGCTAGGGGAATACAGAAGAGCGGTGTCATGGTCCAAGTACATAGTGTCTTCGGGAGCGGCCATTAAAGGAGAAGGAGAAGAGGAATGGAGTGCGGATCTGTCGCAGCTGTTCATAGGTTCGAAATTCGCATGCGGAAGGCACAGCAGGATATACAGAGGGATATACAAGCACATGGATGTTGCAATCAAGCTTGTCAGTCAGCCGGAGGAGGATGAGGAGCTGGCTGCTCAGCTTGAGAGCCACTTCACTTCTGAGGTTGCGCTTCTCTTTCGCTTGCACCATCCTAATATCATTACTTTTGTAGGAGCTTGCAAGAAGCCCCCTGTATTTTGCATAATCACAGAATACTTAGCTGGTGGCTCATTGAGAAGCTTCCTTCAAAGACAAGGGCCACATTCCCTCCCTCTAAAACTTGTTCTAAAGCTAGCCTTAGACATTGCCAAGGGTATGCAATACCTTCACTCTGAGGGCATACTCCATAGGGATCTCAAATCGGAGAATCTTCTGTTGGGTGAAGATATGTGCGTTAAAGTCGCAGACTTTGGGATCTCATGCTTAGAATCCCAGATTGGTAGCGCGAAAGGGTTCACTGGAACTTACCGTTGGATGGCGCCGGAAATGATCAAGGAGAAGCACCATACCAAGAAAGTAGATGTCTACAGTTTTGCCATTGTTCTTTGGGAGCTTCTAACAGGCCTAACACCCTTTGAGAATATGACACCAGAACAGGCAGCATTTGCAGTGACTCACAAGAATGCAAGGCCTCCATTACCATGTGATTGTCCATGGGCATTTAGTAATCTAATAAACAAATGCTGGTCAAGCAATCCAAAAAAACGACCACACTTTGATGAGATAGTGTCTATTTTGGAGAGCTACATAGAATCACTTGAACAAGATCCTGAATTTTTCACCAATTACAAACCACTTCCTCGGATACGCAATATCATTCTCAGATGCTTACCTGAGTGTAACTCCCGCCATGTATCCTCTTCTTCTTCCTCTTCCAAAGCTTAG 1104 0.4611 MAMAKNLYWLKEVSNNVKSGGRRGGRRLSLGEYRRAVSWSKYIVSSGAAIKGEGEEEWSADLSQLFIGSKFACGRHSRIYRGIYKHMDVAIKLVSQPEEDEELAAQLESHFTSEVALLFRLHHPNIITFVGACKKPPVFCIITEYLAGGSLRSFLQRQGPHSLPLKLVLKLALDIAKGMQYLHSEGILHRDLKSENLLLGEDMCVKVADFGISCLESQIGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFAIVLWELLTGLTPFENMTPEQAAFAVTHKNARPPLPCDCPWAFSNLINKCWSSNPKKRPHFDEIVSILESYIESLEQDPEFFTNYKPLPRIRNIILRCLPECNSRHVSSSSSSSKA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242303g00001 367 FunFam Serine/threonine-protein kinase isoform 1 55 147 - -
Stsc242303g00001 367 Gene3D Transferase(Phosphotransferase) domain 1 147 350 - -
Stsc242303g00001 367 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242303g00001 367 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 322 - -
Stsc242303g00001 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Stsc242303g00001 367 PRINTS Tyrosine kinase catalytic domain signature 143 156 IPR001245 GO:0004672|GO:0006468
Stsc242303g00001 367 PRINTS Tyrosine kinase catalytic domain signature 246 268 IPR001245 GO:0004672|GO:0006468
Stsc242303g00001 367 PRINTS Tyrosine kinase catalytic domain signature 290 312 IPR001245 GO:0004672|GO:0006468
Stsc242303g00001 367 PRINTS Tyrosine kinase catalytic domain signature 181 199 IPR001245 GO:0004672|GO:0006468
Stsc242303g00001 367 PRINTS Tyrosine kinase catalytic domain signature 227 237 IPR001245 GO:0004672|GO:0006468
Stsc242303g00001 367 Gene3D Phosphorylase Kinase; domain 1 55 146 - -
Stsc242303g00001 367 SUPERFAMILY Protein kinase-like (PK-like) 54 319 IPR011009 -
Stsc242303g00001 367 CDD STKc_MAP3K-like 67 319 - -
Stsc242303g00001 367 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242303g00001 367 Pfam Protein tyrosine and serine/threonine kinase 68 319 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242303g00001 Stsc-Chr242303 1714 5870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242303g00001 38 353 MAP Kinase Kinase Kinase AT1G62400 59.688 2.57e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc242303g00001 PK_Tyr_Ser-Thr 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242303g00001 - - gmx:100778530 606.675