Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2422g00002 ATGGCTTCTTGTGGTTATCATTTTTGTCTCTTGTGCTGGGAAGGATATATCAGCACATCTATTAAGGATGGCCCTGGATGTTTGATGCTAAGATGTCCTGCTCCCACTTGTGGTGGTGCTGTTGGGCAAGATATGATTAACCAAGTAGCACCTGATGAAGATAAACTGAAGTATTCCCGCTTCCTTCTTAGGTCTTATATTGAAGACAACAAGAAGCAGGAGCAGTTTTTGATGCATCACAATATGCATTCTTTGGTAAAGATGCTGTTCAGAAAGTTGAAATCAGAGGTTAAAAATCCATCTGGATTCTTAATATTCTATCATCACAATCAAACAAAATCTCTATAG 348 0.3851 MASCGYHFCLLCWEGYISTSIKDGPGCLMLRCPAPTCGGAVGQDMINQVAPDEDKLKYSRFLLRSYIEDNKKQEQFLMHHNMHSLVKMLFRKLKSEVKNPSGFLIFYHHNQTKSL 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2422g00002 115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 70 IPR013083 -
Stsc2422g00002 115 FunFam RBR-type E3 ubiquitin transferase 1 70 - -
Stsc2422g00002 115 ProSiteProfiles TRIAD supradomain profile. 1 115 IPR044066 -
Stsc2422g00002 115 SUPERFAMILY RING/U-box 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2422g00002 Stsc-Chr2422 5178 6453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2422g00002 2 74 ARIADNE family AT1G65430 64.384 8.07e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2422g00002 K11968 - gmx:100784195 130.183