Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242294g00005 ATGGTGATACCCACCGCGCTTCTAGAAACTTCGCCATGGGCCTCTTCAACCTTGGAATCCGAAAAGGTGATAACCGTAGACAATCCTCCAGAGAATTGCATGAGTTTCTCGGAGATTTCCAGCATGGAAGGGAAGCTGCCGGAGGTGGATATTGCCCCCGACGACATGGTGACACTTCCATTCTCCTCCGGCACGACGGGGTTGCCTAAGGGTGTGATTCTAACACACAGGAGTCTAATAACAAATGTGGCTCAGGTGCTTGATGGAAAGAACCCTAACTTGAATATGAAGGAAGAGGATGTAGTGCTTTGTGTCCTACCATTGTTTCACATTTACGCGTTGCACTGTGTGATGTTGTGCTCTATGAGAGTAGGGTGTACAATGTTGCTTAAGGAGAAGTTTGAGATGAGAGCCATGTTGGAGCTTGTGGAGAAGCACAGGGTTTCAGTTGTGATGGCAGTGCCGCCGTTGGTGGTGGCACTGTCAAAGAACCCCATAGCGGAGGAGTATGACCTTAGCTCCATCCGGATGGTGATGTCCGGAGGTGCTCCACTTAAAGCAAACTTCGAGGAGGCTTTTCATAGTAGGATGCCCAAAGCAATCTTTCGACAGGCTTTGGGGATGACTGAATCAGGGCCAGTGATAACTATGTCATTAGGGTTTGCAAAGTATCCGATGACATCTAAGTTAGAGTCATGTGGTACAGTCATTAGAAATGCAGAAATGAAGATTATTGATCCTTTAACAGGCTCTTCTCACTCTTATAATACCTTGAGTGAGATCTGCATTCGAGGTCAACAAATCATGAAAGGATACCTGAATGATGAGAAGGCCACAGCAGAAGCTATTGATGAAGAGGGTTGGCTTCATACTGGTGATATTGGCTATGTGGACAATGATGATGAGGTTTTCATTGTTGATAGACTCAAAGAAATCATCAAATTCAAAGGCTACCAGGTGGCTCCGGCAGAACTTGAAGGCCTTCTTATGAGTCATCCTTCCATTGAAGATGCAGCTGTTGTCCCGCAAAAAGATGATGTAGCTGGTGAAGTTCCAGTTGCTTTTGTGGTGAGGTCATCAAATAATGGTGATTTTGATCTTGTTACTGAAGATGCCGTAAAGGACTTTATAGCTAAACAGGTTGCGTTTTACAAGAGGCCACAGAGAATAATATTCATTGATAAAATTCCAAAGTCTGCAATTGGCAAGATATTAAGAAAAGAACTCAAAGCAAAGCTCCCTATCTACCAAGTCAACCCTGTCTAA 1266 0.4455 MVIPTALLETSPWASSTLESEKVITVDNPPENCMSFSEISSMEGKLPEVDIAPDDMVTLPFSSGTTGLPKGVILTHRSLITNVAQVLDGKNPNLNMKEEDVVLCVLPLFHIYALHCVMLCSMRVGCTMLLKEKFEMRAMLELVEKHRVSVVMAVPPLVVALSKNPIAEEYDLSSIRMVMSGGAPLKANFEEAFHSRMPKAIFRQALGMTESGPVITMSLGFAKYPMTSKLESCGTVIRNAEMKIIDPLTGSSHSYNTLSEICIRGQQIMKGYLNDEKATAEAIDEEGWLHTGDIGYVDNDDEVFIVDRLKEIIKFKGYQVAPAELEGLLMSHPSIEDAAVVPQKDDVAGEVPVAFVVRSSNNGDFDLVTEDAVKDFIAKQVAFYKRPQRIIFIDKIPKSAIGKILRKELKAKLPIYQVNPV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242294g00005 421 Pfam AMP-binding enzyme C-terminal domain 324 403 IPR025110 -
Stsc242294g00005 421 Gene3D - 3 309 IPR042099 -
Stsc242294g00005 421 Gene3D - 310 414 IPR045851 -
Stsc242294g00005 421 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 23 411 - -
Stsc242294g00005 421 FunFam 4-coumarate--CoA ligase 2 311 414 - -
Stsc242294g00005 421 ProSitePatterns Putative AMP-binding domain signature. 59 70 IPR020845 -
Stsc242294g00005 421 SUPERFAMILY Acetyl-CoA synthetase-like 34 412 - -
Stsc242294g00005 421 Pfam AMP-binding enzyme 21 315 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242294g00005 Stsc-Chr242294 25545 29222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242294g00005 30 381 Monolignol Biosynthesis Gene Families AT1G51680 58.427 6.37e-142 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242294g00005 K01904 - qsa:O6P43_001775 528.48